Factsheet for Bra028003.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93763	Canola	cytosol, nucleus, plastid	97.74	98.11
AT1G33475.1	Thale cress	cytosol	75.09	78.04
Bra000701.1-P	Field mustard	cytosol, extracellular, nucleus	57.36	59.14
VIT_18s0089g00870.t01	Wine grape	nucleus	44.15	47.95
KRH56413	Soybean	cytosol	49.81	47.48
PGSC0003DMT400083261	Potato	cytosol	39.62	43.39
Solyc06g064430.1.1	Tomato	cytosol	38.49	42.32
KRH62495	Soybean	cytosol	46.42	40.73
GSMUA_Achr8P32370_001	Banana	cytosol	36.98	35.9
HORVU7Hr1G076840.1	Barley	mitochondrion, nucleus, peroxisome	32.08	30.69
Os08t0110300-01	Rice	cytosol, mitochondrion, nucleus	32.08	30.69
TraesCS7D01G318000.1	Wheat	mitochondrion, nucleus, peroxisome	31.7	30.32
TraesCS7B01G221800.1	Wheat	nucleus	31.32	29.96
EES14394	Sorghum	mitochondrion	29.06	26.19
Bra003092.1-P	Field mustard	extracellular	24.91	24.81
Bra019024.1-P	Field mustard	cytosol, plasma membrane, plastid	23.02	24.4
Bra022619.1-P	Field mustard	extracellular, plasma membrane	21.89	22.75
TraesCS7A01G321000.1	Wheat	cytosol, golgi, plasma membrane	30.94	21.03
Zm00001d000424_P001	Maize	plastid	30.19	20.05

Protein Annotations

EnsemblPlants:Bra028003.1	EnsemblPlants:Bra028003.1-P	EnsemblPlantsGene:Bra028003	Gene3D:3.30.450.50	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR010908	InterPro:Longin-like_dom_sf
InterPro:Longin_dom	PANTHER:PTHR21136	PANTHER:PTHR21136:SF162	PFscan:PS50859	SEG:seg	SMART:SM01270
SUPFAM:SSF64356	TMHMM:TMhelix	UniParc:UPI00025421FC	UniProt:M4EGT8	MapMan:22.7.6	:

Description

AT1G33475 (E=5e-102) | INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: inflorescence meristem, male gametophyte, sepal, carpel, petiole; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: synaptobrevin-related family protein (TAIR:AT4G10170.2); Has 148 Blast hits to 148 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA09:+:19491884..19492681

Molecular Weight (calculated)

29459.1 Da

IEP (calculated)

9.445

GRAVY (calculated)

-0.415

Length

265 amino acids

Sequence
(BLAST)

001: MGSTVHYCCV SRGNQILYGY NNGGDHHRNE SLAALCLEKT PPFHKWYFET ISKRTFGFLI EEDGLVYFAI VDEVFKRSSV LEFLENLRDE LKKADKKNSR
101: GSFSGSISFN NVQDQLVRRL IASLERVAES TNHPTCLPLS SPSIDGAGQS DVAISTKAPL LGRSNKQEKK KKKGKDHVNT LRGVEVEEQR KSTDRGNVTE
201: CSNASSAAAA AATYVPRRDR SSGSQSFEKK WRRQVKIVLV IDAAICLTLL GVWLAICQGI QCIRS

Best Arabidopsis Sequence Match ( AT1G33475.1 )
(BLAST)

001: MGSIQNTVHY CCVSRDNQIM YAYNNAGDHR NNESLAALCL EKTPPFHKWY FETRGKKTFG FLMKDDFVYF AIVDDVFKKS SVLDFLEKLR DELKEANKKN
101: SRGSFSGSIS FSNVQDQIVR RLIASLEFDH TCLPLSSPSI DGAEQSYASN SKAPLLGRSN KQDKKKGRDH AHSLRGIEIE EHRKSNDRGN VTECSNASSE
201: SATYVPRRGR SGGSQSIERK WRRQVKIVLA IDIAICLTLL GVWLAICHGI ECTRS

Arabidopsis Description

PHYL1.2Phytolongin Phyl1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q84WF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.