Factsheet for GSMUA_Achr8P32370_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G076840.1	Barley	mitochondrion, nucleus, peroxisome	55.31	54.51
TraesCS7B01G221800.1	Wheat	nucleus	54.95	54.15
TraesCS7D01G318000.1	Wheat	mitochondrion, nucleus, peroxisome	54.58	53.79
Os08t0110300-01	Rice	cytosol, mitochondrion, nucleus	54.21	53.43
EES14394	Sorghum	mitochondrion	50.18	46.6
AT4G10170.1	Thale cress	cytosol	38.46	41.34
VIT_18s0089g00870.t01	Wine grape	nucleus	34.07	38.11
Bra028003.1-P	Field mustard	nucleus	35.9	36.98
AT1G33475.1	Thale cress	cytosol	34.43	36.86
CDX93763	Canola	cytosol, nucleus, plastid	35.53	36.74
PGSC0003DMT400083261	Potato	cytosol	32.23	36.36
CDX90746	Canola	cytosol, extracellular, nucleus	34.07	36.19
CDY05086	Canola	cytosol, extracellular, nucleus	33.7	35.8
Bra000701.1-P	Field mustard	cytosol, extracellular, nucleus	33.7	35.8
TraesCS7A01G321000.1	Wheat	cytosol, golgi, plasma membrane	50.55	35.38
Zm00001d000424_P001	Maize	plastid	51.65	35.34
KRH56413	Soybean	cytosol	35.53	34.89
Solyc06g064430.1.1	Tomato	cytosol	30.4	34.44
CDY15276	Canola	nucleus	35.53	33.56
CDY70770	Canola	nucleus	35.53	33.56
KRH62495	Soybean	cytosol	34.8	31.46

Protein Annotations

EnsemblPlants:GSMUA_Achr8P32370_001	EnsemblPlants:GSMUA_Achr8T32370_001	EnsemblPlantsGene:GSMUA_Achr8G32370_001	Gene3D:3.30.450.50	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Longin-like_dom_sf	PANTHER:PTHR21136
PANTHER:PTHR21136:SF88	SEG:seg	SUPFAM:SSF64356	TMHMM:TMhelix	UniParc:UPI000295D318	UniProt:M0TVI9
MapMan:22.7.6	:	:	:	:	:

Description

Putative Probable VAMP-like protein At1g33475 [Source:GMGC_GENE;Acc:GSMUA_Achr8G32370_001]

Coordinates

chr8:+:33792754..33793986

Molecular Weight (calculated)

30260.4 Da

IEP (calculated)

8.403

GRAVY (calculated)

-0.166

Length

273 amino acids

Sequence
(BLAST)

001: MNSRRSKSVK LVSSHSQSIE VELGECSQMG SSIDNTVYCC IAKGNKILYS YNSKGHELET LAILCLENAP AFHKWYFHSI GTRTFGFLTA DGHTYFAIID
101: PSVGNLAILQ FLEHIQDGFR KVAKNGFHDD LVPIVQRLIA SLENMPRYAF SLDDNSEGTA SSDGSTSTKA PLLGKNSGNH HDKKKMKDKV LQSDDVIEDD
201: ADRTVKIDMP PQTVGAMSLP RSLSSTRLRV QQAGRRLWCR HVKIVIATDI IICLILFGVW LAVCRGFHCV SGK

Best Arabidopsis Sequence Match ( AT4G10170.2 )
(BLAST)

001: MGLIKNTVHY CCVSRDNQIL YSYNGGDQTN ESLAALCLEK SPPFHTWYFE TIGKRRFGFL IGDGFVYFAI VDEVLKRSSV LKFLEHLRDE FKKAARENSR
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS

Arabidopsis Description

PHYL1.1Phytolongin Phyl1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.