CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular

Predictor Summary:

plastid 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, plastid
Any Predictor:	extracellular, plasma membrane, plastid
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29864	Canola	cytosol, plasma membrane, plastid	89.08	84.8
Bra019024.1-P	Field mustard	cytosol, plasma membrane, plastid	82.35	78.4
AT4G27840.1	Thale cress	plasma membrane	66.39	60.77
CDY50497	Canola	extracellular	57.56	51.5
CDX96172	Canola	extracellular	56.3	50.57
CDY27036	Canola	extracellular, plasma membrane	53.78	50.2
CDY19649	Canola	extracellular	55.46	49.44
PGSC0003DMT400047728	Potato	cytosol	39.08	35.5
KRH64430	Soybean	nucleus	31.93	35.35
Solyc03g083070.1.1	Tomato	cytosol	38.24	34.6
VIT_16s0098g01770.t01	Wine grape	cytosol	38.24	33.33
KRH53507	Soybean	nucleus	31.51	32.05
CDX93763	Canola	cytosol, nucleus, plastid	25.63	23.11
CDY15276	Canola	nucleus	26.05	21.45
CDY70770	Canola	nucleus	26.05	21.45
CDY05086	Canola	cytosol, extracellular, nucleus	22.69	21.01
CDX90746	Canola	cytosol, extracellular, nucleus	22.27	20.62

Protein Annotations

EnsemblPlants:CDY68387	EnsemblPlantsGene:GSBRNA2T00073576001	Gene3D:3.30.450.50	GO:A0A078JSJ9	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Longin-like_dom_sf	PANTHER:PTHR21136
PANTHER:PTHR21136:SF93	ProteinID:CDY68387	ProteinID:CDY68387.1	SUPFAM:SSF64356	TMHMM:TMhelix	UniParc:UPI0004EF1289
UniProt:A0A078JSJ9	MapMan:22.7.6	:	:	:	:

Description

BnaCnng58790DBnaCnng58790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JSJ9]

Coordinates

chrLK037257:+:3015..3731

Molecular Weight (calculated)

26730.8 Da

IEP (calculated)

9.528

GRAVY (calculated)

-0.106

Length

238 amino acids

Sequence
(BLAST)

001: MMSNPRLLFY SCIARGTVIL AEFSSKDEPE IEALALRCIQ NVPSHHSMIS QTVRKRTYAS IIDGLFTYFA ILDEAATKKE SLWLFTRLKS AMEALVSDGS
101: ALDKPTQHCL QSKLDPVFAE IAGGGNNNKK DLEPELGLDS SKEQRALKPL LAKPLMVLKK NKKRVQTEAK MDVAGGVSVS NSRGLPRNGL IHDHHHRQKA
201: KQIWKKHVWV VLMFDVCICL VLFGIWLWVC QGFQCIQA

Best Arabidopsis Sequence Match ( AT4G27840.1 )
(BLAST)

001: MTSNQRMLFY SCIAKGTVIL AEFASKEEPG IEDLALRCIE NVPPHHSMIS HTVHKRTYAL IIDGLFSYFA ILDEVVAKSE SVWLFNRLKS ATESLMEDGS
101: TADSLDNPTQ HCLQSKLDPV FAEIAAIGGN HNKDLELEFG SPRSIAREIK SNNQSLDSSK GRKGGALMPL LGKPLRVLKN KKRLQTEAKS EGHWNEKKMD
201: LGGGGKGVRN GLIHDHHHRQ KAKQIWRKHV WIVLMFDLCI CLVLFGIWLW ICQGFQCIDG

Arabidopsis Description

PHYL2.1Phytolongin Phyl2.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STP2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.