Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra035381.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10020.1 | Bra035381.1-P | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60157 | Canola | cytosol | 99.34 | 98.69 |
| CDY00899 | Canola | cytosol | 97.37 | 97.37 |
| AT3G10020.1 | Thale cress | cytosol | 84.87 | 86.58 |
| Bra001291.1-P | Field mustard | cytosol | 84.21 | 84.77 |
| KRH67831 | Soybean | cytosol | 56.58 | 56.95 |
| KRG96117 | Soybean | nucleus | 51.97 | 54.11 |
| PGSC0003DMT400007053 | Potato | cytosol | 51.32 | 53.79 |
| VIT_08s0007g04000.t01 | Wine grape | cytosol | 53.29 | 53.29 |
| Solyc09g008970.1.1 | Tomato | cytosol | 45.39 | 50.74 |
| TraesCS1D01G424500.1 | Wheat | cytosol | 46.71 | 50.35 |
| TraesCS1A01G416700.1 | Wheat | cytosol | 48.03 | 50.34 |
| TraesCS1B01G446900.1 | Wheat | cytosol | 46.71 | 48.97 |
| Os11t0149200-00 | Rice | plastid | 45.39 | 47.26 |
| PGSC0003DMT400007051 | Potato | cytosol | 44.74 | 47.22 |
| Zm00001d023387_P001 | Maize | cytosol | 44.74 | 45.95 |
| Os12t0147200-01 | Rice | plastid | 44.08 | 45.58 |
| Solyc09g008980.1.1 | Tomato | plastid | 46.05 | 33.98 |
| KXG22962 | Sorghum | plastid | 46.05 | 32.41 |
| Zm00001d008473_P001 | Maize | cytosol | 20.39 | 23.66 |
| Zm00001d008484_P001 | Maize | cytosol | 30.92 | 23.62 |
Protein Annotations
| EnsemblPlants:Bra029811.1 | EnsemblPlants:Bra029811.1-P | EnsemblPlantsGene:Bra029811 | GO:GO:0006091 | GO:GO:0006950 | GO:GO:0006979 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009061 | GO:GO:0009987 | PANTHER:PTHR12626 | PANTHER:PTHR12626:SF2 |
| UniParc:UPI0002547A42 | UniProt:M4ELZ1 | MapMan:35.2 | : | : | : |
Description
AT3G10020 (E=8e-072) | unknown protein
Coordinates
chrA05:+:22179371..22179829
Molecular Weight (calculated)
16977.9 Da
IEP (calculated)
4.778
GRAVY (calculated)
-1.112
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTVSVDETK NTVVLRAEHR DEEGRKAVDK FELKTRNPET IKQVEKKLME KGVQRMERHP ADGIPLKKQP KSGHGGKYTW EGPDRVEDYE MQPDPPAMDE
101: GDPNYDEEQA KKNTGGGDDV AVELVKGEVE VAKEAPTGVA RVEVDPRLIS SP
101: GDPNYDEEQA KKNTGGGDDV AVELVKGEVE VAKEAPTGVA RVEVDPRLIS SP
001: MQAVSVDETK NTVVLRAEHK NEEGRKSVDK FEVKTRNPET IKSVERKLME KGVQRMDRHP SDGIPLRRPP SKSGHGGKYT WEGPDRMEDY EMQPDPPAMD
101: EGDPNYDEEQ VKKSGDDVAV ELVKGEVEVA KEAPAGVARV EVDPRLVGR
101: EGDPNYDEEQ VKKSGDDVAV ELVKGEVEVA KEAPAGVARV EVDPRLVGR
Arabidopsis Description
AT3g10020/T22K18_16 [Source:UniProtKB/TrEMBL;Acc:Q9SR67]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.