Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015729 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10020.1 | PGSC0003DMT400015729 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g008970.1.1 | Tomato | cytosol | 78.62 | 83.82 |
| VIT_08s0007g04000.t01 | Wine grape | cytosol | 55.86 | 53.29 |
| Bra001291.1-P | Field mustard | cytosol | 53.79 | 51.66 |
| CDX74003 | Canola | cytosol | 53.79 | 51.66 |
| Bra029811.1-P | Field mustard | cytosol | 53.79 | 51.32 |
| CDY66900 | Canola | cytosol | 53.1 | 50.99 |
| CDY60157 | Canola | cytosol | 53.79 | 50.98 |
| CDY00899 | Canola | cytosol | 53.1 | 50.66 |
| CDX71716 | Canola | cytosol | 35.86 | 50.49 |
| AT3G10020.1 | Thale cress | cytosol | 51.72 | 50.34 |
| KRH67831 | Soybean | cytosol | 52.41 | 50.33 |
| KRG96117 | Soybean | nucleus | 50.34 | 50.0 |
| CDX91281 | Canola | cytosol | 34.48 | 48.54 |
| PGSC0003DMT400007051 | Potato | cytosol | 47.59 | 47.92 |
| CDX91279 | Canola | cytosol | 33.79 | 47.57 |
| TraesCS1A01G416700.1 | Wheat | cytosol | 46.21 | 46.21 |
| TraesCS1D01G424500.1 | Wheat | cytosol | 44.83 | 46.1 |
| TraesCS1B01G446900.1 | Wheat | cytosol | 42.76 | 42.76 |
| Zm00001d023387_P001 | Maize | cytosol | 41.38 | 40.54 |
| Os11t0149200-00 | Rice | plastid | 40.0 | 39.73 |
| Os12t0147200-01 | Rice | plastid | 40.0 | 39.46 |
| KXG22962 | Sorghum | plastid | 44.14 | 29.63 |
| Zm00001d008473_P001 | Maize | cytosol | 17.93 | 19.85 |
| Zm00001d008484_P001 | Maize | cytosol | 26.9 | 19.6 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400007053 | EnsemblPlantsGene:PGSC0003DMG400002724 | EntrezGene:102596945 | PANTHER:PTHR12626 | PANTHER:PTHR12626:SF2 | PGSC:PGSC0003DMG400002724 |
| RefSeq:XP_006341175.1 | SEG:seg | UniParc:UPI000294A538 | UniProt:M0ZSE0 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400002724]
Coordinates
chr9:-:3978234..3979062
Molecular Weight (calculated)
16366.3 Da
IEP (calculated)
4.526
GRAVY (calculated)
-1.006
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPVVEETTN GKVTIKTECR ANEEGRKHIE KLELDTKNVD TVKYVEKKLT EKGVQRLERH PSDGLPLKHD PKKGYGGKYT WEGPDKDKEL DMVVPPALDE
101: KDPNYVNEEE TEEEEGGVIV GEIEVAKLAE EGVARIEVDP NLKID
101: KDPNYVNEEE TEEEEGGVIV GEIEVAKLAE EGVARIEVDP NLKID
001: MQAVSVDETK NTVVLRAEHK NEEGRKSVDK FEVKTRNPET IKSVERKLME KGVQRMDRHP SDGIPLRRPP SKSGHGGKYT WEGPDRMEDY EMQPDPPAMD
101: EGDPNYDEEQ VKKSGDDVAV ELVKGEVEVA KEAPAGVARV EVDPRLVGR
101: EGDPNYDEEQ VKKSGDDVAV ELVKGEVEVA KEAPAGVARV EVDPRLVGR
Arabidopsis Description
AT3g10020/T22K18_16 [Source:UniProtKB/TrEMBL;Acc:Q9SR67]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.