Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os10t0362300-03 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10020.1 | Os10t0362300-03 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G424500.1 | Wheat | cytosol | 72.11 | 75.18 |
| TraesCS1B01G446900.1 | Wheat | cytosol | 71.43 | 72.41 |
| TraesCS1A01G416700.1 | Wheat | cytosol | 70.07 | 71.03 |
| Zm00001d023387_P001 | Maize | cytosol | 70.75 | 70.27 |
| Os11t0149200-00 | Rice | plastid | 66.67 | 67.12 |
| KRG96117 | Soybean | nucleus | 46.94 | 47.26 |
| KXG22962 | Sorghum | plastid | 68.71 | 46.76 |
| Bra001291.1-P | Field mustard | cytosol | 47.62 | 46.36 |
| KRH67831 | Soybean | cytosol | 47.62 | 46.36 |
| CDX74003 | Canola | cytosol | 47.62 | 46.36 |
| CDX71716 | Canola | cytosol | 31.97 | 45.63 |
| CDY00899 | Canola | cytosol | 46.94 | 45.39 |
| CDX91281 | Canola | cytosol | 31.29 | 44.66 |
| AT3G10020.1 | Thale cress | cytosol | 44.9 | 44.3 |
| Bra029811.1-P | Field mustard | cytosol | 45.58 | 44.08 |
| CDY60157 | Canola | cytosol | 45.58 | 43.79 |
| CDY66900 | Canola | cytosol | 44.9 | 43.71 |
| CDX91279 | Canola | cytosol | 30.61 | 43.69 |
| VIT_08s0007g04000.t01 | Wine grape | cytosol | 42.86 | 41.45 |
| PGSC0003DMT400007051 | Potato | cytosol | 40.14 | 40.97 |
| PGSC0003DMT400007053 | Potato | cytosol | 39.46 | 40.0 |
| Solyc09g008970.1.1 | Tomato | cytosol | 32.65 | 35.29 |
| Zm00001d008473_P001 | Maize | cytosol | 26.53 | 29.77 |
| Zm00001d008484_P001 | Maize | cytosol | 40.14 | 29.65 |
| Solyc09g008980.1.1 | Tomato | plastid | 40.82 | 29.13 |
Protein Annotations
| EMBL:AK063680 | EnsemblPlants:Os12t0147200-01 | EnsemblPlantsGene:Os12g0147200 | EntrezGene:4351498 | PANTHER:PTHR12626 | PANTHER:PTHR12626:SF2 |
| ProteinID:ABA95789.1 | ProteinID:BAF29172.1 | ProteinID:BAT15890.1 | RefSeq:XP_015618631.1 | SEG:seg | UniParc:UPI0000681A48 |
| UniProt:Q2QXQ7 | MapMan:35.2 | : | : | : | : |
Description
Conserved hypothetical protein. (Os12t0147200-01)
Coordinates
chr12:+:2312450..2313217
Molecular Weight (calculated)
16370.0 Da
IEP (calculated)
5.312
GRAVY (calculated)
-1.044
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MMYMRATHRD EEGKKVTEKV AVPETRHPDT ARHFERKLDQ QGLHRMERHP ANGSRGIGAP PPKSGRGGKF TWEGPDSIVD SQLDPLPAAI DRNDPNYEEE
101: EGDHEREADV VGEVEVAKVA GDARDGVARV DVVAPPQLHE KLQLQPQ
101: EGDHEREADV VGEVEVAKVA GDARDGVARV DVVAPPQLHE KLQLQPQ
001: MQAVSVDETK NTVVLRAEHK NEEGRKSVDK FEVKTRNPET IKSVERKLME KGVQRMDRHP SDGIPLRRPP SKSGHGGKYT WEGPDRMEDY EMQPDPPAMD
101: EGDPNYDEEQ VKKSGDDVAV ELVKGEVEVA KEAPAGVARV EVDPRLVGR
101: EGDPNYDEEQ VKKSGDDVAV ELVKGEVEVA KEAPAGVARV EVDPRLVGR
Arabidopsis Description
AT3g10020/T22K18_16 [Source:UniProtKB/TrEMBL;Acc:Q9SR67]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.