CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10020.1	KRH14106	AT5G35750.1	18642946
AT3G10020.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67831	Soybean	cytosol	84.25	81.46
VIT_08s0007g04000.t01	Wine grape	cytosol	58.22	55.92
Bra001291.1-P	Field mustard	cytosol	56.16	54.3
CDX74003	Canola	cytosol	56.16	54.3
CDX71716	Canola	cytosol	37.67	53.4
CDY66900	Canola	cytosol	54.11	52.32
Bra029811.1-P	Field mustard	cytosol	54.11	51.97
AT3G10020.1	Thale cress	cytosol	52.74	51.68
CDY60157	Canola	cytosol	54.11	51.63
CDX91281	Canola	cytosol	36.3	51.46
PGSC0003DMT400007051	Potato	cytosol	50.68	51.39
CDY00899	Canola	cytosol	53.42	51.32
TraesCS1D01G424500.1	Wheat	cytosol	48.63	50.35
PGSC0003DMT400007053	Potato	cytosol	50.0	50.34
TraesCS1A01G416700.1	Wheat	cytosol	49.32	49.66
CDX91279	Canola	cytosol	34.93	49.51
TraesCS1B01G446900.1	Wheat	cytosol	47.95	48.28
Os12t0147200-01	Rice	plastid	47.26	46.94
Zm00001d023387_P001	Maize	cytosol	46.58	45.95
Os11t0149200-00	Rice	plastid	45.89	45.89
Solyc09g008970.1.1	Tomato	cytosol	41.78	44.85
Solyc09g008980.1.1	Tomato	plastid	54.11	38.35
KXG22962	Sorghum	plastid	49.32	33.33
Zm00001d008473_P001	Maize	cytosol	26.71	29.77
Zm00001d008484_P001	Maize	cytosol	32.88	24.12

Protein Annotations

EMBL:ACUP02012146	EnsemblPlants:KRG96117	EnsemblPlantsGene:GLYMA_19G190400	EntrezGene:100808941	PANTHER:PTHR12626	PANTHER:PTHR12626:SF2
ProteinID:KRG96117	ProteinID:KRG96117.1	UniParc:UPI0001CA9F4A	UniProt:I1NAI0	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr19:+:44800479..44801185

Molecular Weight (calculated)

16208.8 Da

IEP (calculated)

4.630

GRAVY (calculated)

-0.899

Length

146 amino acids

Sequence
(BLAST)

001: MKPIDDKQET VTIRTVSHDE EGKKRVEKTE LSTHNIDTIR YVEKKLINKG VQRQDRHPAD GIGISRPPPK SGHGGKFTWE GPATVENSEL MAAPAAMDEG
101: DPNYVDWEEN GEEASELVVG EVEVSKVAQE HDGLARVDVD PRLQVN

Best Arabidopsis Sequence Match ( AT3G10020.1 )
(BLAST)

001: MQAVSVDETK NTVVLRAEHK NEEGRKSVDK FEVKTRNPET IKSVERKLME KGVQRMDRHP SDGIPLRRPP SKSGHGGKYT WEGPDRMEDY EMQPDPPAMD
101: EGDPNYDEEQ VKKSGDDVAV ELVKGEVEVA KEAPAGVARV EVDPRLVGR

Arabidopsis Description

AT3g10020/T22K18_16 [Source:UniProtKB/TrEMBL;Acc:Q9SR67]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.