Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0057g00690.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10020.1 | VIT_12s0057g00690.t01 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH67831 | Soybean | cytosol | 59.21 | 59.6 |
| KRG96117 | Soybean | nucleus | 55.92 | 58.22 |
| PGSC0003DMT400007053 | Potato | cytosol | 53.29 | 55.86 |
| Bra029811.1-P | Field mustard | cytosol | 53.29 | 53.29 |
| CDY60157 | Canola | cytosol | 53.29 | 52.94 |
| CDY00899 | Canola | cytosol | 52.63 | 52.63 |
| Bra001291.1-P | Field mustard | cytosol | 51.97 | 52.32 |
| CDX74003 | Canola | cytosol | 51.97 | 52.32 |
| PGSC0003DMT400007051 | Potato | cytosol | 49.34 | 52.08 |
| CDY66900 | Canola | cytosol | 51.32 | 51.66 |
| CDX71716 | Canola | cytosol | 34.87 | 51.46 |
| AT3G10020.1 | Thale cress | cytosol | 50.0 | 51.01 |
| Solyc09g008970.1.1 | Tomato | cytosol | 44.74 | 50.0 |
| CDX91281 | Canola | cytosol | 32.89 | 48.54 |
| CDX91279 | Canola | cytosol | 32.24 | 47.57 |
| TraesCS1D01G424500.1 | Wheat | cytosol | 43.42 | 46.81 |
| TraesCS1B01G446900.1 | Wheat | cytosol | 44.08 | 46.21 |
| TraesCS1A01G416700.1 | Wheat | cytosol | 43.42 | 45.52 |
| Zm00001d023387_P001 | Maize | cytosol | 43.42 | 44.59 |
| Os11t0149200-00 | Rice | plastid | 41.45 | 43.15 |
| Os12t0147200-01 | Rice | plastid | 41.45 | 42.86 |
| Solyc09g008980.1.1 | Tomato | plastid | 54.61 | 40.29 |
| KXG22962 | Sorghum | plastid | 46.05 | 32.41 |
| Zm00001d008473_P001 | Maize | cytosol | 21.05 | 24.43 |
| Zm00001d008484_P001 | Maize | cytosol | 31.58 | 24.12 |
Protein Annotations
| EntrezGene:100254632 | wikigene:100254632 | MapMan:35.2 | ProteinID:CCB55392 | ProteinID:CCB55392.1 | UniProt:F6HKH0 |
| EMBL:FN595991 | GO:GO:0006091 | GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009061 | GO:GO:0009987 | EntrezGene:LOC100254632 | wikigene:LOC100254632 | PANTHER:PTHR12626 | PANTHER:PTHR12626:SF2 |
| TIGR:TC59403 | UniParc:UPI0001983E2E | ArrayExpress:VIT_08s0007g04000 | EnsemblPlantsGene:VIT_08s0007g04000 | EnsemblPlants:VIT_08s0007g04000.t01 | unigene:Vvi.16832 |
| RefSeq:XP_002283685 | RefSeq:XP_002283685.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr8:-:18010449..18011069
Molecular Weight (calculated)
16790.8 Da
IEP (calculated)
4.840
GRAVY (calculated)
-0.880
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGVDEGKGK ETVTFRAPSH DEEGRKRVEK VEVDTLKYIE KKLENKGVLR MERHPADGLS LKRGPPKSGH GGKYTWEGPK DSVHNELEGA PPALDEKDPN
101: FVDEEEEERI VKGEEEDVAG LVVGEVEVAK AAEVKEGVAR VEVDPGLKLK VI
101: FVDEEEEERI VKGEEEDVAG LVVGEVEVAK AAEVKEGVAR VEVDPGLKLK VI
001: MQAVSVDETK NTVVLRAEHK NEEGRKSVDK FEVKTRNPET IKSVERKLME KGVQRMDRHP SDGIPLRRPP SKSGHGGKYT WEGPDRMEDY EMQPDPPAMD
101: EGDPNYDEEQ VKKSGDDVAV ELVKGEVEVA KEAPAGVARV EVDPRLVGR
101: EGDPNYDEEQ VKKSGDDVAV ELVKGEVEVA KEAPAGVARV EVDPRLVGR
Arabidopsis Description
AT3g10020/T22K18_16 [Source:UniProtKB/TrEMBL;Acc:Q9SR67]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.