Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10020.1 | KRH14106 | AT5G35750.1 | 18642946 |
| AT3G10020.1 | KRH74010 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG96117 | Soybean | nucleus | 81.46 | 84.25 |
| VIT_08s0007g04000.t01 | Wine grape | cytosol | 59.6 | 59.21 |
| Bra001291.1-P | Field mustard | cytosol | 58.28 | 58.28 |
| CDX74003 | Canola | cytosol | 58.28 | 58.28 |
| CDX71716 | Canola | cytosol | 39.07 | 57.28 |
| Bra029811.1-P | Field mustard | cytosol | 56.95 | 56.58 |
| AT3G10020.1 | Thale cress | cytosol | 55.63 | 56.38 |
| CDY66900 | Canola | cytosol | 56.29 | 56.29 |
| CDY60157 | Canola | cytosol | 56.95 | 56.21 |
| CDX91281 | Canola | cytosol | 37.75 | 55.34 |
| CDY00899 | Canola | cytosol | 55.63 | 55.26 |
| PGSC0003DMT400007051 | Potato | cytosol | 50.99 | 53.47 |
| CDX91279 | Canola | cytosol | 36.42 | 53.4 |
| PGSC0003DMT400007053 | Potato | cytosol | 50.33 | 52.41 |
| TraesCS1D01G424500.1 | Wheat | cytosol | 45.7 | 48.94 |
| TraesCS1A01G416700.1 | Wheat | cytosol | 46.36 | 48.28 |
| Os12t0147200-01 | Rice | plastid | 46.36 | 47.62 |
| TraesCS1B01G446900.1 | Wheat | cytosol | 45.7 | 47.59 |
| Solyc09g008970.1.1 | Tomato | cytosol | 42.38 | 47.06 |
| Zm00001d023387_P001 | Maize | cytosol | 45.03 | 45.95 |
| Os11t0149200-00 | Rice | plastid | 43.05 | 44.52 |
| Solyc09g008980.1.1 | Tomato | plastid | 54.97 | 40.29 |
| KXG22962 | Sorghum | plastid | 47.02 | 32.87 |
| Zm00001d008473_P001 | Maize | cytosol | 23.84 | 27.48 |
| Zm00001d008484_P001 | Maize | cytosol | 33.11 | 25.13 |
Protein Annotations
| EMBL:ACUP02002083 | EnsemblPlants:KRH67831 | EnsemblPlantsGene:GLYMA_03G190100 | EntrezGene:100785774 | PANTHER:PTHR12626 | PANTHER:PTHR12626:SF2 |
| ProteinID:KRH67831 | ProteinID:KRH67831.1 | SEG:seg | UniParc:UPI0001CAB2EE | UniProt:K7KFX8 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr3:+:40085931..40086686
Molecular Weight (calculated)
17059.1 Da
IEP (calculated)
4.884
GRAVY (calculated)
-0.865
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPIDDKQET VTIRAVSHDE EGRKRVEKIE LNTHNIHTIK YVEKKLINKG VQRKDRHPAD GIRIGRPPPK SGHGGKFTWE GPASVEDNEL MTEPAAMDEG
101: DPNYLDWEER GEETSELVVG EVEVAKVAEE HDGVARVEVD PRLRVIMSDL C
101: DPNYLDWEER GEETSELVVG EVEVAKVAEE HDGVARVEVD PRLRVIMSDL C
001: MQAVSVDETK NTVVLRAEHK NEEGRKSVDK FEVKTRNPET IKSVERKLME KGVQRMDRHP SDGIPLRRPP SKSGHGGKYT WEGPDRMEDY EMQPDPPAMD
101: EGDPNYDEEQ VKKSGDDVAV ELVKGEVEVA KEAPAGVARV EVDPRLVGR
101: EGDPNYDEEQ VKKSGDDVAV ELVKGEVEVA KEAPAGVARV EVDPRLVGR
Arabidopsis Description
AT3g10020/T22K18_16 [Source:UniProtKB/TrEMBL;Acc:Q9SR67]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.