CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 3
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28395	Canola	endoplasmic reticulum, peroxisome, plasma membrane	62.5	9.26
CDX93729	Canola	peroxisome, plasma membrane, plastid, vacuole	80.56	8.0
CDY15314	Canola	plasma membrane	80.56	8.0
CDX70886	Canola	plasma membrane	56.94	5.27
CDX88879	Canola	plasma membrane	56.94	5.27
CDX92509	Canola	plasma membrane	55.56	5.13
CDY58977	Canola	endoplasmic reticulum, golgi, vacuole	5.56	3.23
CDY42286	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	20.83	1.93
CDX73295	Canola	endoplasmic reticulum, golgi, plasma membrane	2.78	0.48
CDY71196	Canola	endoplasmic reticulum	1.39	0.26
CDY44935	Canola	extracellular, golgi, plasma membrane	0.0	0.0
CDY58976	Canola	endoplasmic reticulum, golgi, plastid	0.0	0.0

Protein Annotations

MapMan:35.2	GO:A0A078CAR5	EnsemblPlants:CDX73294	ProteinID:CDX73294	ProteinID:CDX73294.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004576	GO:GO:0005575	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00106374001	InterPro:Oligo_trans_STT3	PFAM:PF02516	PANTHER:PTHR13872	PANTHER:PTHR13872:SF38
TMHMM:TMhelix	UniPathway:UPA00378	UniParc:UPI0004EE3F16	SEG:seg	:	:

Description

BnaC05g28120D

Coordinates

chrLK031798:+:1102290..1102508

Molecular Weight (calculated)

7774.6 Da

IEP (calculated)

7.347

GRAVY (calculated)

1.150

Length

72 amino acids

Sequence
(BLAST)

1: MVTAAVVAYF FGKEIWDTGA GLVAAALIAI FPGYISRSVD NEAVAIFALL LTFYLFVKAV NTISLGRICV YH

Best Arabidopsis Sequence Match ( AT1G34130.1 )
(BLAST)

001: MGGKSEPAKS ESMATKPDLL NTSFFSFKSL KLKTKQQELL LRISILGLVY ILAFIARLFS VLRYESMIHE FDPYFNYRTT LFLTEKGFYE FWNWFDSESW
101: YPLGRIIGGT LYPGLMVTAA LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AVLIAICPGY ISRSVAGSYD NEAVAIFALL
201: LTFYLFVKAV NTGSLAWALA SAFGYFYMVS AWGGYVFIIN LVPLYVLVLL ITGRYSMRLY IAYNCMYILG MLLAMQIRFV GFQHVQSGEH MGAMGVFLLM
301: QVFYFLDWVK YQLNDTKLFQ TFLRITVTSA ILVGGVAVGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY
401: FCFKRLTDAT IFIVMYGLTS LYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLTSLLRTK QKVSQTGSTK GAGSSKASSK VTLDQSQPFQ KNGAIALLVG
501: VFYLLSRYAI HCTWVTAEAY SSPSIVLAAR GAHGNRIIFD DYREAYYWLR QNTATDAKIM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE
601: DDAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEFRV DKGASPKMLN CLMYKLCYYR FGELTTEYGK PPGYDRARGV
701: EIGNKDIKLE HLEEAYTTSN WIVRIYRVKP PTNRL

Arabidopsis Description

STT3BGlycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PVA0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.