CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, vacuole, plasma membrane

Predictor Summary:

plastid 2
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, plastid, vacuole
Any Predictor:	peroxisome, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028034.1-P	Field mustard	golgi, plasma membrane, plastid, vacuole	97.24	97.24
CDY15314	Canola	plasma membrane	96.55	96.55
AT1G34130.1	Thale cress	plasma membrane	94.76	93.47
CDX73295	Canola	endoplasmic reticulum, golgi, plasma membrane	52.55	91.59
Solyc03g098600.2.1	Tomato	nucleus, plastid, unclear	88.41	88.41
PGSC0003DMT400026302	Potato	endoplasmic reticulum, golgi, plasma membrane	88.28	88.28
GSMUA_Achr3P00140_001	Banana	endoplasmic reticulum, golgi	71.72	87.25
KRH38891	Soybean	endoplasmic reticulum	87.03	86.56
VIT_17s0053g00140.t01	Wine grape	plasma membrane	87.86	85.96
KRH09394	Soybean	endoplasmic reticulum, mitochondrion	86.34	85.4
CDY28395	Canola	endoplasmic reticulum, peroxisome, plasma membrane	57.1	85.19
Zm00001d001846_P001	Maize	plasma membrane	84.14	84.84
Zm00001d026607_P002	Maize	plasma membrane	84.14	84.72
EES13093	Sorghum	endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid	84.14	84.72
Os04t0675500-01	Rice	plasma membrane	83.86	84.33
TraesCS2D01G558800.1	Wheat	plasma membrane	83.31	83.54
TraesCS2A01G555600.1	Wheat	golgi	83.17	83.52
TraesCS2B01G587900.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	83.03	83.26
CDX73294	Canola	endoplasmic reticulum, golgi, vacuole	8.0	80.56
HORVU2Hr1G119980.1	Barley	cytosol	66.9	73.26
CDY58976	Canola	endoplasmic reticulum, golgi, plastid	7.72	52.83
CDY44935	Canola	extracellular, golgi, plasma membrane	6.76	51.04
CDX88879	Canola	plasma membrane	51.31	47.81
CDX70886	Canola	plasma membrane	51.31	47.81
CDX92509	Canola	plasma membrane	51.31	47.75
CDY71196	Canola	endoplasmic reticulum	23.17	44.44
CDY58977	Canola	endoplasmic reticulum, golgi, vacuole	7.31	42.74
CDY42286	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	42.48	39.69

Protein Annotations

MapMan:18.1.1.5.7	Gene3D:3.40.50.12610	GO:A0A078DZ64	EnsemblPlants:CDX93729	ProteinID:CDX93729	ProteinID:CDX93729.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004576	GO:GO:0005575	GO:GO:0005975	GO:GO:0006464
GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00156445001	InterPro:Oligo_trans_STT3	PFAM:PF02516	PANTHER:PTHR13872
PANTHER:PTHR13872:SF38	TMHMM:TMhelix	UniPathway:UPA00378	UniParc:UPI0004EE6E87	SEG:seg	:

Description

BnaA09g23290D

Coordinates

chrLK031877:-:252360..255728

Molecular Weight (calculated)

81916.9 Da

IEP (calculated)

9.278

GRAVY (calculated)

0.318

Length

725 amino acids

Sequence
(BLAST)

001: MAAKKASPDL LNSSFSFKSL KLKTKQQELL LRVSILGLVY VLAFIARLFS VLRYESMIHE FDPYFNYRTT LFLTEKGFYE FWNWFDSESW YPLGRIIGGT
101: LYPGLMVTAA LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE IWDTGAGLVA AALIAICPGY ISRSVAGSYD NEAVAIFALL LTFYLFVKAV
201: KTGSLSWALG SAFGYFYMVS AWGGYVFIIN LVPLYVLVLL ITGRYSMRLY VAYNCMYILG MLLAMQIRFV GFQHVQSGEH MAAMGVFLLM QVFYFLDWVK
301: HQLNDTKLFQ TFLRITVTSA ILVGGIALGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY FCFKRLSDAT
401: IFIVMYGLTS LYFAGVMVRL ILVATPAVCL ISAIAVSATV KNLTSLLRTK QKVPQTGSAK GVGSSKSSSK VTLDQSQPFH KNGAIALLVG VFYLLSRYAI
501: HCTWVTSEAY SSPSIVLAAR GAHGNRIIFD DYREAYYWLR QNTPTDAKVM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE DEAYDIMRSL
601: DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVYPVIKEP DYLVNGEFRV DKGASPKMLN CLMYKLCYYR FGELVTEYGK PTGYDRARGV EIGNKDIKLE
701: HLEEAYTTSN WIVRIYRVKP PTNRL

Best Arabidopsis Sequence Match ( AT1G34130.1 )
(BLAST)

001: MGGKSEPAKS ESMATKPDLL NTSFFSFKSL KLKTKQQELL LRISILGLVY ILAFIARLFS VLRYESMIHE FDPYFNYRTT LFLTEKGFYE FWNWFDSESW
101: YPLGRIIGGT LYPGLMVTAA LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AVLIAICPGY ISRSVAGSYD NEAVAIFALL
201: LTFYLFVKAV NTGSLAWALA SAFGYFYMVS AWGGYVFIIN LVPLYVLVLL ITGRYSMRLY IAYNCMYILG MLLAMQIRFV GFQHVQSGEH MGAMGVFLLM
301: QVFYFLDWVK YQLNDTKLFQ TFLRITVTSA ILVGGVAVGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY
401: FCFKRLTDAT IFIVMYGLTS LYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLTSLLRTK QKVSQTGSTK GAGSSKASSK VTLDQSQPFQ KNGAIALLVG
501: VFYLLSRYAI HCTWVTAEAY SSPSIVLAAR GAHGNRIIFD DYREAYYWLR QNTATDAKIM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE
601: DDAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEFRV DKGASPKMLN CLMYKLCYYR FGELTTEYGK PPGYDRARGV
701: EIGNKDIKLE HLEEAYTTSN WIVRIYRVKP PTNRL

Arabidopsis Description

STT3BGlycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PVA0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.