CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:

plastid 2
peroxisome 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034441.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	91.98	87.13
CDX73295	Canola	endoplasmic reticulum, golgi, plasma membrane	56.17	65.62
CDX73294	Canola	endoplasmic reticulum, golgi, vacuole	9.26	62.5
CDY15314	Canola	plasma membrane	85.8	57.52
GSMUA_Achr3P00140_001	Banana	endoplasmic reticulum, golgi	70.16	57.21
CDX93729	Canola	peroxisome, plasma membrane, plastid, vacuole	85.19	57.1
AT1G34130.1	Thale cress	plasma membrane	83.95	55.51
HORVU2Hr1G119980.1	Barley	cytosol	72.63	53.32
Solyc03g098600.2.1	Tomato	nucleus, plastid, unclear	77.98	52.28
PGSC0003DMT400026302	Potato	endoplasmic reticulum, golgi, plasma membrane	77.57	52.0
KRH38891	Soybean	endoplasmic reticulum	77.57	51.71
VIT_17s0053g00140.t01	Wine grape	plasma membrane	78.4	51.42
KRH09394	Soybean	endoplasmic reticulum, mitochondrion	77.37	51.3
Os04t0675500-01	Rice	plasma membrane	75.1	50.62
EES13093	Sorghum	endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid	74.69	50.42
TraesCS2D01G558800.1	Wheat	plasma membrane	74.69	50.21
Zm00001d001846_P001	Maize	plasma membrane	74.07	50.07
TraesCS2A01G555600.1	Wheat	golgi	74.28	50.0
Zm00001d026607_P002	Maize	plasma membrane	74.07	50.0
TraesCS2B01G587900.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	74.07	49.79
CDY71196	Canola	endoplasmic reticulum	31.69	40.74
CDX70886	Canola	plasma membrane	49.38	30.85
CDX88879	Canola	plasma membrane	49.18	30.72
CDX92509	Canola	plasma membrane	49.18	30.68
CDY42286	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	39.51	24.74
CDY58977	Canola	endoplasmic reticulum, golgi, vacuole	5.76	22.58
CDY44935	Canola	extracellular, golgi, plasma membrane	1.65	8.33
CDY58976	Canola	endoplasmic reticulum, golgi, plastid	0.21	0.94

Protein Annotations

Gene3D:3.40.50.12610	MapMan:35.1	GO:A0A078GP98	UniProt:A0A078GP98	EnsemblPlants:CDY28395	ProteinID:CDY28395
ProteinID:CDY28395.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004576	GO:GO:0005575	GO:GO:0005975
GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00040224001	InterPro:Oligo_trans_STT3
PFAM:PF02516	PANTHER:PTHR13872	PANTHER:PTHR13872:SF38	TMHMM:TMhelix	UniPathway:UPA00378	UniParc:UPI0004EED752
SEG:seg	:	:	:	:	:

Description

BnaA05g18450DBnaA05g18450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GP98]

Coordinates

chrLK032219:+:150570..153235

Molecular Weight (calculated)

54487.2 Da

IEP (calculated)

9.221

GRAVY (calculated)

0.184

Length

486 amino acids

Sequence
(BLAST)

001: MTRPKSSTSP SRLCLLTVNK HHNEAGLVDA ALIAICPGYI SRSVAGSYDN EAVAIFALLL TFYLFVKAVN TGSLSWALGS AFGYFYMVSS WGGYVFIINL
101: VFYFLDWMKY QLNDIKLFQT FLRINVTSAI LVGGIALGVG TTSGYISPWT RRFYSLLDPL MQRITFPLLP LFLSISLRHD ATIFIVMYGL TSLYFAGVMI
201: RLILVATPAI CLISAIAVSA TVKHLTSLLR AEQKVPQTGS SKGPGSSKAS SKVTLDPSQP FQRNGAIALL VGVFYLLTAR GAHGNRIIFD DYCEAYYWLR
301: QNTPTDAKVM SWWDYGYQIT AMGNITVIVD NNTWNNTHIA TVGRAMSSYE DEAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVDPVIKEP
401: DYLVNGELRV DKGASPKMLN CLMYKLCYYR FGELVTEYGS QPGTYDRARW VEIEKKYIKL KHLEEAYTTS NWIVRIYRVK PPTNRL

Best Arabidopsis Sequence Match ( AT1G34130.1 )
(BLAST)

001: MGGKSEPAKS ESMATKPDLL NTSFFSFKSL KLKTKQQELL LRISILGLVY ILAFIARLFS VLRYESMIHE FDPYFNYRTT LFLTEKGFYE FWNWFDSESW
101: YPLGRIIGGT LYPGLMVTAA LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AVLIAICPGY ISRSVAGSYD NEAVAIFALL
201: LTFYLFVKAV NTGSLAWALA SAFGYFYMVS AWGGYVFIIN LVPLYVLVLL ITGRYSMRLY IAYNCMYILG MLLAMQIRFV GFQHVQSGEH MGAMGVFLLM
301: QVFYFLDWVK YQLNDTKLFQ TFLRITVTSA ILVGGVAVGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY
401: FCFKRLTDAT IFIVMYGLTS LYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLTSLLRTK QKVSQTGSTK GAGSSKASSK VTLDQSQPFQ KNGAIALLVG
501: VFYLLSRYAI HCTWVTAEAY SSPSIVLAAR GAHGNRIIFD DYREAYYWLR QNTATDAKIM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE
601: DDAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEFRV DKGASPKMLN CLMYKLCYYR FGELTTEYGK PPGYDRARGV
701: EIGNKDIKLE HLEEAYTTSN WIVRIYRVKP PTNRL

Arabidopsis Description

STT3BGlycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PVA0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.