Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28395 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 65.62 | 56.17 |
| CDY15314 | Canola | plasma membrane | 91.83 | 52.69 |
| CDX93729 | Canola | peroxisome, plasma membrane, plastid, vacuole | 91.59 | 52.55 |
| CDY71196 | Canola | endoplasmic reticulum | 33.41 | 36.77 |
| CDX70886 | Canola | plasma membrane | 47.36 | 25.32 |
| CDX88879 | Canola | plasma membrane | 47.36 | 25.32 |
| CDX92509 | Canola | plasma membrane | 47.12 | 25.16 |
| CDY42286 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 45.67 | 24.48 |
| CDY58977 | Canola | endoplasmic reticulum, golgi, vacuole | 4.09 | 13.71 |
| CDY44935 | Canola | extracellular, golgi, plasma membrane | 1.44 | 6.25 |
| CDX73294 | Canola | endoplasmic reticulum, golgi, vacuole | 0.48 | 2.78 |
| CDY58976 | Canola | endoplasmic reticulum, golgi, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.50.12610 | MapMan:35.1 | GO:A0A078C901 | EnsemblPlants:CDX73295 | ProteinID:CDX73295 | ProteinID:CDX73295.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004576 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0006464 |
| GO:GO:0006486 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00106375001 | InterPro:Oligo_trans_STT3 | PFAM:PF02516 | PANTHER:PTHR13872 |
| PANTHER:PTHR13872:SF38 | TMHMM:TMhelix | UniPathway:UPA00378 | UniParc:UPI0004EE12CA | SEG:seg | : |
Description
BnaC05g28110D
Coordinates
chrLK031798:+:1102589..1104763
Molecular Weight (calculated)
47229.5 Da
IEP (calculated)
9.080
GRAVY (calculated)
0.144
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MYILGMLLAM QIRFVGFQHV QSGEHMAVFL LMQVFYFLDW VKYQLNDTNV WLYISPCTGR FYSLLDPTHA KPHIPIIASV SEHQPTAWSS FMFDYHILLF
101: LFPAGLYFCF KRLSDATIFI VMYGLTSLYF AGVMCHSLYF AGVMVRLIFV ATPAICLISA IAVSATVKNL TSLLRAKQKV PQTGSSKGPG SSKASSKVTL
201: DQAQPFQKNG AIALLVGVFY LLSRYAIHCT WVTSEAYSSP SIVLAARGAH GNRIIFDDYH EAYYWLTQNS PTDAKVMSWW DYGYQITAMG NRTVIVDNNT
301: WNNTHIATVG RAMFLWMVRI GGGVYPVIKE PDYLVNGEFL VDKGVSPKML NCLMYKLCYY RFGELVTEYG KPKGYDRARG VEIGNKDIKL EHLEEDYTTS
401: NWIARIYRVK PPTNRL
101: LFPAGLYFCF KRLSDATIFI VMYGLTSLYF AGVMCHSLYF AGVMVRLIFV ATPAICLISA IAVSATVKNL TSLLRAKQKV PQTGSSKGPG SSKASSKVTL
201: DQAQPFQKNG AIALLVGVFY LLSRYAIHCT WVTSEAYSSP SIVLAARGAH GNRIIFDDYH EAYYWLTQNS PTDAKVMSWW DYGYQITAMG NRTVIVDNNT
301: WNNTHIATVG RAMFLWMVRI GGGVYPVIKE PDYLVNGEFL VDKGVSPKML NCLMYKLCYY RFGELVTEYG KPKGYDRARG VEIGNKDIKL EHLEEDYTTS
401: NWIARIYRVK PPTNRL
001: MGGKSEPAKS ESMATKPDLL NTSFFSFKSL KLKTKQQELL LRISILGLVY ILAFIARLFS VLRYESMIHE FDPYFNYRTT LFLTEKGFYE FWNWFDSESW
101: YPLGRIIGGT LYPGLMVTAA LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AVLIAICPGY ISRSVAGSYD NEAVAIFALL
201: LTFYLFVKAV NTGSLAWALA SAFGYFYMVS AWGGYVFIIN LVPLYVLVLL ITGRYSMRLY IAYNCMYILG MLLAMQIRFV GFQHVQSGEH MGAMGVFLLM
301: QVFYFLDWVK YQLNDTKLFQ TFLRITVTSA ILVGGVAVGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY
401: FCFKRLTDAT IFIVMYGLTS LYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLTSLLRTK QKVSQTGSTK GAGSSKASSK VTLDQSQPFQ KNGAIALLVG
501: VFYLLSRYAI HCTWVTAEAY SSPSIVLAAR GAHGNRIIFD DYREAYYWLR QNTATDAKIM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE
601: DDAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEFRV DKGASPKMLN CLMYKLCYYR FGELTTEYGK PPGYDRARGV
701: EIGNKDIKLE HLEEAYTTSN WIVRIYRVKP PTNRL
101: YPLGRIIGGT LYPGLMVTAA LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AVLIAICPGY ISRSVAGSYD NEAVAIFALL
201: LTFYLFVKAV NTGSLAWALA SAFGYFYMVS AWGGYVFIIN LVPLYVLVLL ITGRYSMRLY IAYNCMYILG MLLAMQIRFV GFQHVQSGEH MGAMGVFLLM
301: QVFYFLDWVK YQLNDTKLFQ TFLRITVTSA ILVGGVAVGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY
401: FCFKRLTDAT IFIVMYGLTS LYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLTSLLRTK QKVSQTGSTK GAGSSKASSK VTLDQSQPFQ KNGAIALLVG
501: VFYLLSRYAI HCTWVTAEAY SSPSIVLAAR GAHGNRIIFD DYREAYYWLR QNTATDAKIM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE
601: DDAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEFRV DKGASPKMLN CLMYKLCYYR FGELTTEYGK PPGYDRARGV
701: EIGNKDIKLE HLEEAYTTSN WIVRIYRVKP PTNRL
Arabidopsis Description
STT3BGlycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PVA0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.