CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane, plastid, endoplasmic reticulum

Predictor Summary:

plastid 3
mitochondrion 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80827
CDY10444
CDY55545

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19690.1	CDX80827	AT5G02502.1	23493405
AT5G19690.1	CDY10444	AT5G02502.1	23493405
AT5G19690.1	CDY55545	AT5G02502.1	23493405

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71196	Canola	endoplasmic reticulum	43.3	88.89
CDX92509	Canola	plasma membrane	80.28	79.97
Bra002255.1-P	Field mustard	plastid	80.28	79.77
CDX88879	Canola	plasma membrane	78.35	78.15
CDX70886	Canola	plasma membrane	78.22	78.02
AT5G19690.1	Thale cress	plasma membrane	78.22	77.92
Solyc12g008360.1.1	Tomato	nucleus	68.17	68.52
TraesCS3B01G308200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	56.57	67.23
EES19829	Sorghum	endoplasmic reticulum, golgi, plasma membrane	67.65	67.14
CDY58976	Canola	endoplasmic reticulum, golgi, plastid	9.15	66.98
TraesCS1D01G342400.1	Wheat	unclear	63.27	66.53
TraesCS1A01G340400.1	Wheat	golgi	66.88	65.95
KXG33358	Sorghum	plasma membrane	65.34	65.84
TraesCS1B01G352700.1	Wheat	golgi	66.75	65.74
Zm00001d043441_P002	Maize	plasma membrane	64.82	65.32
Os05t0519900-02	Rice	endoplasmic reticulum, golgi	67.4	64.65
TraesCS3A01G274600.1	Wheat	plasma membrane	64.82	63.75
TraesCS3D01G273900.1	Wheat	plasma membrane	64.95	62.92
Zm00001d038804_P002	Maize	plasma membrane	67.65	62.5
GSMUA_AchrUn_...	Banana	cytosol	5.8	60.0
HORVU3Hr1G071140.34	Barley	golgi, mitochondrion, plasma membrane, plastid	64.82	59.04
CDY44935	Canola	extracellular, golgi, plasma membrane	7.22	58.33
CDY58977	Canola	endoplasmic reticulum, golgi, vacuole	8.76	54.84
VIT_07s0005g06040.t01	Wine grape	golgi, mitochondrion, nucleus	2.96	54.76
KRH25466	Soybean	cytosol	2.19	50.0
CDX73295	Canola	endoplasmic reticulum, golgi, plasma membrane	24.48	45.67
CDX93729	Canola	peroxisome, plasma membrane, plastid, vacuole	39.69	42.48
CDY15314	Canola	plasma membrane	39.18	41.93
VIT_03s0088g00210.t01	Wine grape	mitochondrion	10.57	41.41
CDY28395	Canola	endoplasmic reticulum, peroxisome, plasma membrane	24.74	39.51
CDX73294	Canola	endoplasmic reticulum, golgi, vacuole	1.93	20.83

Protein Annotations

MapMan:18.1.1.5.7	Gene3D:3.40.50.12610	GO:A0A078HX07	UniProt:A0A078HX07	EnsemblPlants:CDY42286	ProteinID:CDY42286
ProteinID:CDY42286.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004576	GO:GO:0005575	GO:GO:0005975
GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00074524001	InterPro:Oligo_trans_STT3
PFAM:PF02516	PANTHER:PTHR13872	PANTHER:PTHR13872:SF37	TMHMM:TMhelix	UniPathway:UPA00378	UniParc:UPI0004EF1DE7
SEG:seg	:	:	:	:	:

Description

BnaC02g08920DBnaC02g08920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HX07]

Coordinates

chrLK032520:+:98941..103728

Molecular Weight (calculated)

85940.8 Da

IEP (calculated)

9.097

GRAVY (calculated)

0.274

Length

776 amino acids

Sequence
(BLAST)

001: MAALERSPPP GTSSAMRNAF GTVLSALLDP RLIVVASFLP HSLCAKYESV IHEFDPYFNY RVTQFLSKNG IYEFWNWFDD RTWYPPGRVI GGTVYPGLTL
101: TVGTIWWVLN SLNIPLSVET VCVFTAPVFS AFASWATYLL TKGSGAGLTA AALLAMVSLN TRTSCLFLLI SSCFVFYCHV FGIGASFSGI CYKSLIIIDI
201: TAFKSSIILN RPLVTSEEAP IMFHMVTTNI DNPQFVLYYI ESLAPTVCMR LQVVLGTLLA ALVPVVGFNA VLTSEHFASF LVFIIIHVVA LVYYIKGILS
301: PKMFKVAATL VVSIGLVVCL IVVAVLMALV ASSPTGGWSG RSLSLLDPTY ASKYIPIIAS VSEHQPPTWP SYFMDINVLA FLVPAGIVAC FSLLSDASSF
401: VVLYIVMSVY FSGVMVRLML VLAPAACIMS GIARSQAFDV FTASIKYQLG EMSNSKDDPE DKTSTNNETK DDASSAKGEK VAKERPSKKG KKKEREPADK
501: PTVKSKIVKK RALVLPLETS IVALRLLIML GAFYVIHCVW AAAEAYSAPS IVLTSQSHDG LHVFDDFRES YAWLSHNTDV DDKVASWWDY GYQTTAMANR
601: TVIVDNNTWN NTHIATVGTA MSSPEKAAWE IFNSLDVKYV LVVFGGVIGY SSDDINKFLW MVRIGGGVFP HIKEADYLRD GQYRIDSEAT PTILNCLMYR
701: FVETDGKGYD RVRRTEIGKK NFKLTHFEEV FTSHHWMVRI YKLKPQKNRI RGKGKKLKLK TSTGLSSKTA KKNPWM

Best Arabidopsis Sequence Match ( AT5G19690.1 )
(BLAST)

001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV

Arabidopsis Description

STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.