CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80827
CDY10444
CDY55545

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19690.1	CDX80827	AT5G02502.1	23493405
AT5G19690.1	CDY10444	AT5G02502.1	23493405
AT5G19690.1	CDY55545	AT5G02502.1	23493405

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	11.9	60.0
VIT_07s0005g06040.t01	Wine grape	golgi, mitochondrion, nucleus	5.82	52.38
KRH25466	Soybean	cytosol	4.5	50.0
CDX92509	Canola	plasma membrane	98.94	48.01
Bra002255.1-P	Field mustard	plastid	98.94	47.89
AT5G19690.1	Thale cress	plasma membrane	93.12	45.19
CDX88879	Canola	plasma membrane	92.06	44.73
CDX70886	Canola	plasma membrane	91.8	44.6
CDY42286	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	88.89	43.3
TraesCS3B01G308200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	68.52	39.66
TraesCS1D01G342400.1	Wheat	unclear	75.4	38.62
Solyc12g008360.1.1	Tomato	nucleus	75.4	36.92
VIT_03s0088g00210.t01	Wine grape	mitochondrion	19.05	36.36
TraesCS1A01G340400.1	Wheat	golgi	75.66	36.34
TraesCS1B01G352700.1	Wheat	golgi	75.4	36.17
EES19829	Sorghum	endoplasmic reticulum, golgi, plasma membrane	73.81	35.68
Os05t0519900-02	Rice	endoplasmic reticulum, golgi	74.87	34.98
KXG33358	Sorghum	plasma membrane	70.63	34.68
Zm00001d043441_P002	Maize	plasma membrane	69.05	33.9
CDX73295	Canola	endoplasmic reticulum, golgi, plasma membrane	36.77	33.41
TraesCS3A01G274600.1	Wheat	plasma membrane	69.31	33.21
Zm00001d038804_P002	Maize	plasma membrane	72.75	32.74
TraesCS3D01G273900.1	Wheat	plasma membrane	69.31	32.71
CDY28395	Canola	endoplasmic reticulum, peroxisome, plasma membrane	40.74	31.69
HORVU3Hr1G071140.34	Barley	golgi, mitochondrion, plasma membrane, plastid	70.11	31.1
CDY15314	Canola	plasma membrane	44.44	23.17
CDX93729	Canola	peroxisome, plasma membrane, plastid, vacuole	44.44	23.17
CDY44935	Canola	extracellular, golgi, plasma membrane	2.12	8.33
CDX73294	Canola	endoplasmic reticulum, golgi, vacuole	0.26	1.39
CDY58977	Canola	endoplasmic reticulum, golgi, vacuole	0.0	0.0
CDY58976	Canola	endoplasmic reticulum, golgi, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY71196	EnsemblPlantsGene:GSBRNA2T00012086001	Gene3D:3.40.50.12610	GO:A0A078K033	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR13872	PANTHER:PTHR13872:SF37	ProteinID:CDY71196	ProteinID:CDY71196.1	SEG:seg
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0004EEAAFA	UniProt:A0A078K033	MapMan:18.1.1.5.7	:

Description

BnaCnng71800DBnaCnng71800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K033]

Coordinates

chrLK044876:-:391..2701

Molecular Weight (calculated)

42583.1 Da

IEP (calculated)

9.835

GRAVY (calculated)

-0.340

Length

378 amino acids

Sequence
(BLAST)

001: MSVYFSGVMV RLMLVLAPAA CIMSGIALSQ AFDVFTASIK YQLGRSANSK DDAEDNTSTN NAPKDDSSSG KTDKGEEVAK ERPSKKGKKK EREPADKPSV
101: KSKILKKRAL VLPLEASIVA LLLLIMLGAF YVIHCVWAAA EAYSAPSIVL TSQSRDGLHV FDDFRESYAW LSHNTDVDDK VASWWDYGYQ TTAMANRTVI
201: VDNNTWNNTH IATVGTAMSS PEKAAWEIFN SLDVKYVLVV FGGLIGYPSD DINKFLWMVR IGGGVFPHIK EADYLRDGNY RIDSEATPTM LNCLMYKLSY
301: YRFVETDGKG YDRVRRTEIG KKNFKLTHFE EVFTSHHWMV RIYKLKPQKN RIRGRAKKLK LKTSSGLDSK PAKKNPWI

Best Arabidopsis Sequence Match ( AT5G19690.1 )
(BLAST)

001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV

Arabidopsis Description

STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.