Factsheet for TraesCS1B01G352700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, plasma membrane
iPSORT:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2B01G190800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19690.1	TraesCS2B01G190800.1	AT5G02502.1	23493405

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G340400.1	Wheat	golgi	98.6	98.73
TraesCS1D01G342400.1	Wheat	unclear	91.37	97.56
EES19829	Sorghum	endoplasmic reticulum, golgi, plasma membrane	88.83	89.51
Os05t0519900-02	Rice	endoplasmic reticulum, golgi	88.83	86.53
CDY58977	Canola	endoplasmic reticulum, golgi, vacuole	13.58	86.29
GSMUA_Achr7P24990_001	Banana	plasma membrane	81.98	82.61
Zm00001d038804_P002	Maize	plasma membrane	87.82	82.38
VIT_11s0016g03320.t01	Wine grape	plasma membrane	80.58	81.62
Solyc12g008360.1.1	Tomato	nucleus	79.06	80.7
Bra006514.1-P	Field mustard	plasma membrane	79.44	80.46
CDX88879	Canola	plasma membrane	79.44	80.46
AT5G19690.1	Thale cress	plasma membrane	79.44	80.36
CDX92509	Canola	plasma membrane	79.44	80.36
CDX70886	Canola	plasma membrane	79.31	80.33
Bra002255.1-P	Field mustard	plastid	79.57	80.28
KRH07262	Soybean	endoplasmic reticulum	78.55	79.56
KRH74276	Soybean	nucleus	78.43	79.43
TraesCS3B01G308200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	64.47	77.79
VIT_11s0016g01590.t01	Wine grape	endoplasmic reticulum	11.55	76.47
CDY58976	Canola	endoplasmic reticulum, golgi, plastid	10.15	75.47
CDY71196	Canola	endoplasmic reticulum	36.17	75.4
VIT_12s0028g03220.t01	Wine grape	cytosol	4.19	75.0
GSMUA_AchrUn_...	Banana	cytosol	6.73	70.67
CDY42286	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	65.74	66.75
VIT_07s0005g06040.t01	Wine grape	golgi, mitochondrion, nucleus	3.55	66.67
KRH25466	Soybean	cytosol	2.41	55.88
TraesCS2B01G587900.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	48.22	52.56
VIT_03s0088g00210.t01	Wine grape	mitochondrion	12.06	47.98

Protein Annotations

MapMan:18.1.1.5.7	Gene3D:3.40.50.12610	GO:GO:0003674	GO:GO:0003824	GO:GO:0004576	GO:GO:0005575
GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0019538	InterPro:Oligo_trans_STT3	PFAM:PF02516
PANTHER:PTHR13872	PANTHER:PTHR13872:SF37	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1B01G352700	EnsemblPlants:TraesCS1B01G352700.1	SEG:seg

Description

No Description!

Coordinates

chr1B:-:583442814..583450806

Molecular Weight (calculated)

87170.2 Da

IEP (calculated)

9.419

GRAVY (calculated)

0.309

Length

788 amino acids

Sequence
(BLAST)

001: MAEPVANAAA PAPAPGRLRN AFGGVLCAFT LILIGVLAFS IRLFSVIKYE SVIHEFDPYF NFRVTQFLSK NGIYEFWNWF DDRTWYPLGR VIGGTVYPGL
101: TLTAGSIWWL VNALNIPLSV ETVCVFTAPI FSAIASWATY LLTKEAKGTG AGLMAAAILA MVPSYISRSV AGSYDNEAVA IFALIFTFYL YVKTLNTGSL
201: FYATLNALSY FYMVCSWGGY TFIINLIPMH VLLCIVTGRY SSRLYIAYAP LVILGTLLAA LVPVVGFNAV LTSEHFASFL VFIILHVVAF VYYIKGLLTP
301: RLFKMAMTLV ITVGLAVCFA VVAILVALVA SSPTKGWSGR SLSLLDPTYA SKYIPIIASV SEHQPPTWPS YFMDINVLAF LVPAGIISCF LPLSDASSFM
401: VLYLVTAVYF SGVMVRLMLV LAPAACILSG IALSSAFDVL TRSMKFQLSK LFDDGPAISG NGSPNGSSAS TVNTSSSKNE KTEKSEAAPK EKPSKKNRRK
501: DKEVTESVSV KPKKEKRLSV LPLEASIVCT LLLIALGGFY VVHCVWAAAE AYSAPSIVLT SRSREGLHVF DDFREAYAWL SHNTDVDDKV ASWWDYGYQT
601: TAMANRTVIV DNNTWNNTHI ATVGTAMSSP EKAAWEIFDS LDVKYVLVVF GGLVGYPSDD INKFLWMVRI GGGEFPHIKE PDYLRDGQYR VDAQATPTML
701: NCLMYKLCYY RFVETDGKGF DRVRGYEIGK KHFKLTHFEE VFTTHHWMVR IYKLKPQKNR IRGKLKKSKS SSKTSSTLAA GRKKNPWQ

Best Arabidopsis Sequence Match ( AT5G19690.1 )
(BLAST)

001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV

Arabidopsis Description

STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.