Factsheet for VIT_11s0016g01590.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 3
endoplasmic reticulum 5
vacuole 3
plasma membrane 3
golgi 4
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g03220.t01	Wine grape	cytosol	31.93	86.36
GSMUA_AchrUn_...	Banana	cytosol	18.49	29.33
VIT_03s0088g00210.t01	Wine grape	mitochondrion	40.34	24.24
TraesCS3B01G308200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	69.75	12.71
VIT_11s0016g03320.t01	Wine grape	plasma membrane	81.51	12.47
TraesCS1D01G342400.1	Wheat	unclear	76.47	12.33
EES19829	Sorghum	endoplasmic reticulum, golgi, plasma membrane	78.15	11.89
TraesCS1A01G340400.1	Wheat	golgi	76.47	11.56
TraesCS1B01G352700.1	Wheat	golgi	76.47	11.55
Os05t0519900-02	Rice	endoplasmic reticulum, golgi	76.47	11.25
Zm00001d038804_P002	Maize	plasma membrane	78.15	11.07
TraesCS3A01G274600.1	Wheat	plasma membrane	73.11	11.03
Zm00001d043441_P002	Maize	plasma membrane	70.59	10.91
KXG33358	Sorghum	plasma membrane	69.75	10.78
TraesCS3D01G273900.1	Wheat	plasma membrane	72.27	10.74
HORVU3Hr1G071140.34	Barley	golgi, mitochondrion, plasma membrane, plastid	71.43	9.98
VIT_17s0053g00140.t01	Wine grape	plasma membrane	58.82	9.45
VIT_07s0005g06040.t01	Wine grape	golgi, mitochondrion, nucleus	0.84	2.38

Protein Annotations

EntrezGene:100854131	wikigene:100854131	MapMan:35.1	ProteinID:CBI27852	ProteinID:CBI27852.3	UniProt:D7TCJ4
EMBL:FN595756	GO:GO:0003674	GO:GO:0003824	GO:GO:0004579	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0008250	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0018279
GO:GO:0019538	GO:GO:0043687	EntrezGene:LOC100854131	wikigene:LOC100854131	PANTHER:PTHR13872	PANTHER:PTHR13872:SF38
UniParc:UPI0001BE3459	ArrayExpress:VIT_11s0016g01590	EnsemblPlantsGene:VIT_11s0016g01590	EnsemblPlants:VIT_11s0016g01590.t01	RefSeq:XP_003633094	RefSeq:XP_003633094.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:1288733..1289595

Molecular Weight (calculated)

14154.3 Da

IEP (calculated)

9.473

GRAVY (calculated)

-0.118

Length

119 amino acids

Sequence
(BLAST)

001: MWFSSLLKYY LKVNFNSLDV KYVLVVFGGL VGYPSDDINK FLWMVHIGVG VFPHIKEPDY LRDGQYQIDS QATPTMLNCL MYKLSYFRFV ETDAKGFDRL
101: RWTDIGKKYF KLTHFKEVR

Best Arabidopsis Sequence Match ( AT5G19690.1 )
(BLAST)

001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV

Arabidopsis Description

STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.