Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- golgi 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G274600.1 | Wheat | plasma membrane | 86.62 | 93.54 |
| TraesCS3D01G273900.1 | Wheat | plasma membrane | 86.85 | 92.38 |
| TraesCS3B01G308200.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 68.31 | 89.13 |
| CDY58977 | Canola | endoplasmic reticulum, golgi, vacuole | 12.68 | 87.1 |
| KXG33358 | Sorghum | plasma membrane | 76.29 | 84.42 |
| Zm00001d043441_P002 | Maize | plasma membrane | 75.7 | 83.77 |
| VIT_11s0016g03320.t01 | Wine grape | plasma membrane | 72.54 | 79.43 |
| GSMUA_Achr7P24990_001 | Banana | plasma membrane | 72.77 | 79.28 |
| CDY58976 | Canola | endoplasmic reticulum, golgi, plastid | 9.86 | 79.25 |
| CDX70886 | Canola | plasma membrane | 72.18 | 79.05 |
| Bra006514.1-P | Field mustard | plasma membrane | 71.95 | 78.79 |
| CDX88879 | Canola | plasma membrane | 71.95 | 78.79 |
| Solyc12g008360.1.1 | Tomato | nucleus | 71.36 | 78.76 |
| CDX92509 | Canola | plasma membrane | 71.83 | 78.56 |
| Bra002255.1-P | Field mustard | plastid | 71.95 | 78.49 |
| AT5G19690.1 | Thale cress | plasma membrane | 71.71 | 78.43 |
| KRH74276 | Soybean | nucleus | 71.36 | 78.15 |
| KRH07262 | Soybean | endoplasmic reticulum | 70.31 | 76.99 |
| VIT_12s0028g03220.t01 | Wine grape | cytosol | 3.87 | 75.0 |
| VIT_11s0016g01590.t01 | Wine grape | endoplasmic reticulum | 9.98 | 71.43 |
| CDY71196 | Canola | endoplasmic reticulum | 31.1 | 70.11 |
| CDY42286 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 59.04 | 64.82 |
| GSMUA_AchrUn_... | Banana | cytosol | 5.28 | 60.0 |
| VIT_07s0005g06040.t01 | Wine grape | golgi, mitochondrion, nucleus | 2.82 | 57.14 |
| KRH25466 | Soybean | cytosol | 2.11 | 52.94 |
| VIT_03s0088g00210.t01 | Wine grape | mitochondrion | 10.68 | 45.96 |
| HORVU2Hr1G119980.1 | Barley | cytosol | 35.21 | 45.32 |
Protein Annotations
| MapMan:18.1.1.5.7 | Gene3D:3.40.50.12610 | UniProt:A0A287LKE9 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004576 |
| GO:GO:0005575 | GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006486 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0019538 |
| EnsemblPlantsGene:HORVU3Hr1G071140 | EnsemblPlants:HORVU3Hr1G071140.34 | InterPro:Oligo_trans_STT3 | PFAM:PF02516 | PANTHER:PTHR13872 | PANTHER:PTHR13872:SF37 |
| TMHMM:TMhelix | UniParc:UPI000B484F54 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:538157832..538165167
Molecular Weight (calculated)
93943.2 Da
IEP (calculated)
9.418
GRAVY (calculated)
0.214
Length
852 amino acids
Sequence
(BLAST)
(BLAST)
001: PNCGTLLQLT QKKCIRSGGL AAPNRPTSSA HSTATLRSGS TAAQQLFRQP SPSSAPQPQS SAGPPMTEPE AGSIAAGGGR LRNALGGALC AFALLLIGVL
101: AFSIRLFSVI KYESVIHEFD PYFNYRVTQF LSKSGIYEFW NWFDDRTWYP LGRVIGGTVY PGLTLTAGTI WWLLNSLNIP LSVETVCVFT APVFSANASW
201: ATYLLTKEAK GNGAGLMAAT ILAMVPSYIS RSVAGSYDNE AVAIFALIFT FYLYVKTLNT GSLFYATLNA LSYFYMVCSW GGYTFIINLI PMHVLLCIVT
301: GRYSSRLYIA YAPLVVLGTL LAALVPVVGF NAVLTSEHFA SFLVFIILHV IALVYYIKGL LTPRLFKVAM TFVLTVGLAL CFAVVAVLVT LVASSPTKGW
401: SGRSLSLLDP TYASKYIPII ASVSEHQPPT WPSYFMAINV LAFLVPAGII SCFLPLSDAS SFLVLYLVTS VYFSGVMVRL MLVLAPAACI LSGIALSEAF
501: NVLTRSMKFQ RPISDDVLPT AGDSTPGSSS TAAAITTSMK SVNIKKEKAE NISKERSSKK NKKEKELVGG SHVRTEKEEK LCVLPSEASA MGILFLIILC
601: GLYVIHCVWA AAEAYSAPSI VLTSHSHDGL HVYDDFRESY AWLRHNTEVD DKVASWWDYG YQTTAMANRT VIVDNNTWNN THIATVGTAM SSPEKEAWEI
701: FNSLDVKYVL VVFGGLIGYP SDDINKFLWM VRIGGGEFPH IKEQDYLRDG NYRVDAEGTP TMLNCLMYKL CYYRFAETDG KGFDRARRYE IGRKHFKLTH
801: FEEVFTTQHW MVRIYKLKPQ KNRVRGKLKL KSKSSSKTSL MRKGAGKKNP WQ
101: AFSIRLFSVI KYESVIHEFD PYFNYRVTQF LSKSGIYEFW NWFDDRTWYP LGRVIGGTVY PGLTLTAGTI WWLLNSLNIP LSVETVCVFT APVFSANASW
201: ATYLLTKEAK GNGAGLMAAT ILAMVPSYIS RSVAGSYDNE AVAIFALIFT FYLYVKTLNT GSLFYATLNA LSYFYMVCSW GGYTFIINLI PMHVLLCIVT
301: GRYSSRLYIA YAPLVVLGTL LAALVPVVGF NAVLTSEHFA SFLVFIILHV IALVYYIKGL LTPRLFKVAM TFVLTVGLAL CFAVVAVLVT LVASSPTKGW
401: SGRSLSLLDP TYASKYIPII ASVSEHQPPT WPSYFMAINV LAFLVPAGII SCFLPLSDAS SFLVLYLVTS VYFSGVMVRL MLVLAPAACI LSGIALSEAF
501: NVLTRSMKFQ RPISDDVLPT AGDSTPGSSS TAAAITTSMK SVNIKKEKAE NISKERSSKK NKKEKELVGG SHVRTEKEEK LCVLPSEASA MGILFLIILC
601: GLYVIHCVWA AAEAYSAPSI VLTSHSHDGL HVYDDFRESY AWLRHNTEVD DKVASWWDYG YQTTAMANRT VIVDNNTWNN THIATVGTAM SSPEKEAWEI
701: FNSLDVKYVL VVFGGLIGYP SDDINKFLWM VRIGGGEFPH IKEQDYLRDG NYRVDAEGTP TMLNCLMYKL CYYRFAETDG KGFDRARRYE IGRKHFKLTH
801: FEEVFTTQHW MVRIYKLKPQ KNRVRGKLKL KSKSSSKTSL MRKGAGKKNP WQ
001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV
Arabidopsis Description
STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.