CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80827
CDY10444
CDY55545

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19690.1	CDX80827	AT5G02502.1	23493405
AT5G19690.1	CDY10444	AT5G02502.1	23493405
AT5G19690.1	CDY55545	AT5G02502.1	23493405

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92509	Canola	plasma membrane	98.39	15.66
CDX70886	Canola	plasma membrane	97.58	15.55
CDX88879	Canola	plasma membrane	97.58	15.55
AT5G19690.1	Thale cress	plasma membrane	96.77	15.4
TraesCS1D01G342400.1	Wheat	unclear	86.29	14.5
Solyc12g008360.1.1	Tomato	nucleus	87.9	14.12
EES19829	Sorghum	endoplasmic reticulum, golgi, plasma membrane	87.9	13.94
KXG33358	Sorghum	plasma membrane	85.48	13.77
TraesCS3A01G274600.1	Wheat	plasma membrane	87.1	13.69
Zm00001d043441_P002	Maize	plasma membrane	84.68	13.64
TraesCS1A01G340400.1	Wheat	golgi	86.29	13.6
TraesCS1B01G352700.1	Wheat	golgi	86.29	13.58
TraesCS3D01G273900.1	Wheat	plasma membrane	87.1	13.48
Os05t0519900-02	Rice	endoplasmic reticulum, golgi	86.29	13.23
Zm00001d038804_P002	Maize	plasma membrane	88.71	13.1
HORVU3Hr1G071140.34	Barley	golgi, mitochondrion, plasma membrane, plastid	87.1	12.68
CDY42286	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	54.84	8.76
TraesCS3B01G308200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	42.74	8.12
CDX93729	Canola	peroxisome, plasma membrane, plastid, vacuole	42.74	7.31
CDY15314	Canola	plasma membrane	41.94	7.17
CDY28395	Canola	endoplasmic reticulum, peroxisome, plasma membrane	22.58	5.76
CDX73294	Canola	endoplasmic reticulum, golgi, vacuole	3.23	5.56
CDX73295	Canola	endoplasmic reticulum, golgi, plasma membrane	13.71	4.09
VIT_03s0088g00210.t01	Wine grape	mitochondrion	2.42	1.52
CDY44935	Canola	extracellular, golgi, plasma membrane	0.81	1.04
KRH25466	Soybean	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0
CDY71196	Canola	endoplasmic reticulum	0.0	0.0
VIT_07s0005g06040.t01	Wine grape	golgi, mitochondrion, nucleus	0.0	0.0
CDY58976	Canola	endoplasmic reticulum, golgi, plastid	0.0	0.0

Protein Annotations

MapMan:35.1	GO:A0A078J6S8	UniProt:A0A078J6S8	EnsemblPlants:CDY58977	ProteinID:CDY58977	ProteinID:CDY58977.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004576	GO:GO:0005575	GO:GO:0005975	GO:GO:0006464
GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00025420001	InterPro:Oligo_trans_STT3	PFAM:PF02516
PANTHER:PTHR13872	PANTHER:PTHR13872:SF37	TMHMM:TMhelix	UniPathway:UPA00378	UniParc:UPI0004EEC177	SEG:seg

Description

BnaC09g37990DBnaC09g37990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6S8]

Coordinates

chrLK033715:+:48114..49382

Molecular Weight (calculated)

13626.4 Da

IEP (calculated)

9.334

GRAVY (calculated)

1.309

Length

124 amino acids

Sequence
(BLAST)

001: MQTLNTGSLF YATLNAIAYF YMVCSWGGYT FIINLIPMHV LLCIVTGRYS PRLYIAYAPL VVLGTLLAAL VPVVGFNAVL TSEHFASFLV FIIIHVVALV
101: YYIKGILSPK MFKVAVTLVV SIGL

Best Arabidopsis Sequence Match ( AT5G19690.1 )
(BLAST)

001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV

Arabidopsis Description

STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.