Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- golgi 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19690.1 | CDX80827 | AT5G02502.1 | 23493405 |
| AT5G19690.1 | CDY10444 | AT5G02502.1 | 23493405 |
| AT5G19690.1 | CDY55545 | AT5G02502.1 | 23493405 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002255.1-P | Field mustard | plastid | 99.49 | 99.23 |
| CDY71196 | Canola | endoplasmic reticulum | 48.01 | 98.94 |
| CDY58977 | Canola | endoplasmic reticulum, golgi, vacuole | 15.66 | 98.39 |
| CDX88879 | Canola | plasma membrane | 94.22 | 94.34 |
| CDX70886 | Canola | plasma membrane | 94.09 | 94.22 |
| AT5G19690.1 | Thale cress | plasma membrane | 93.97 | 93.97 |
| CDY58976 | Canola | endoplasmic reticulum, golgi, plastid | 11.81 | 86.79 |
| Solyc12g008360.1.1 | Tomato | nucleus | 81.39 | 82.12 |
| CDY42286 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 79.97 | 80.28 |
| TraesCS1D01G342400.1 | Wheat | unclear | 75.74 | 79.95 |
| EES19829 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 80.1 | 79.8 |
| TraesCS1A01G340400.1 | Wheat | golgi | 80.36 | 79.54 |
| TraesCS1B01G352700.1 | Wheat | golgi | 80.36 | 79.44 |
| KXG33358 | Sorghum | plasma membrane | 78.18 | 79.09 |
| Zm00001d043441_P002 | Maize | plasma membrane | 77.41 | 78.31 |
| CDY44935 | Canola | extracellular, golgi, plasma membrane | 9.63 | 78.12 |
| Os05t0519900-02 | Rice | endoplasmic reticulum, golgi | 80.87 | 77.87 |
| TraesCS3A01G274600.1 | Wheat | plasma membrane | 77.79 | 76.81 |
| TraesCS3D01G273900.1 | Wheat | plasma membrane | 77.79 | 75.66 |
| Zm00001d038804_P002 | Maize | plasma membrane | 80.1 | 74.29 |
| HORVU3Hr1G071140.34 | Barley | golgi, mitochondrion, plasma membrane, plastid | 78.56 | 71.83 |
| TraesCS3B01G308200.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 60.08 | 71.67 |
| GSMUA_AchrUn_... | Banana | cytosol | 5.78 | 60.0 |
| CDX73294 | Canola | endoplasmic reticulum, golgi, vacuole | 5.13 | 55.56 |
| VIT_07s0005g06040.t01 | Wine grape | golgi, mitochondrion, nucleus | 2.82 | 52.38 |
| CDX93729 | Canola | peroxisome, plasma membrane, plastid, vacuole | 47.75 | 51.31 |
| CDY15314 | Canola | plasma membrane | 47.37 | 50.9 |
| KRH25466 | Soybean | cytosol | 2.18 | 50.0 |
| CDY28395 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 30.68 | 49.18 |
| CDX73295 | Canola | endoplasmic reticulum, golgi, plasma membrane | 25.16 | 47.12 |
| VIT_03s0088g00210.t01 | Wine grape | mitochondrion | 11.17 | 43.94 |
Protein Annotations
| MapMan:18.1.1.5.7 | Gene3D:3.40.50.12610 | GO:A0A078DVP6 | EnsemblPlants:CDX92509 | ProteinID:CDX92509 | ProteinID:CDX92509.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004576 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0006464 |
| GO:GO:0006486 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00154287001 | InterPro:Oligo_trans_STT3 | PFAM:PF02516 |
| PANTHER:PTHR13872 | PANTHER:PTHR13872:SF37 | TMHMM:TMhelix | UniPathway:UPA00378 | UniParc:UPI0004EE585A | SEG:seg |
Description
BnaA10g15480D
Coordinates
chrLK031872:-:994224..1000156
Molecular Weight (calculated)
86223.1 Da
IEP (calculated)
9.381
GRAVY (calculated)
0.317
Length
779 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSPPPGTS SSAMRNAFGT VLSALILLLI GVLAFSIRLF SVIKYESVIH EFDPYFNYRV TQFLSKNGIY EFWNWFDDRT WYPLGRVIGG TVYPGLTLTA
101: GTIWWALNAI NIPLSVETVC VFTAPVFSAF ASWATYLLTK EVKGSGAGLA AAALLAMVPS YISRSVAGSY DNEAVAIFAL IFTFYLYIKT LNTGSLFYAT
201: LNAIAYFYMV CSWGGYTFII NLIPMHVLLC IVTGRYSPRL YIAYAPLVVL GTLLAALVPV VGFNAVLTSE HFASFLVFII IHVVALVYYI KGILSPKMFK
301: VAVTLVVSIG LVVCLIVVAV LMALVASSPT GGWSGRSLSL LDPTYASKYI PIIASVSEHQ PPTWPSYFMD INVLAFLVPA GIIACFSPLS DASSFVVLYI
401: VMSVYFSGVM VRLMLVLAPA ACIMSGIALS QAFDVFTASI KYQLGRSANS KDDAEDNTST NNAPKDDSSS GKTDKGEEVA KERSSKKGKK KEREPADKPS
501: VKSKIAKKRV LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGN YRIDSEATPT MLNCLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKNFKLTHF EEVFTSHHWM VRIYKLKPQK NRIRGRAKKL KLKTSSGLDS KPAKKNPWI
101: GTIWWALNAI NIPLSVETVC VFTAPVFSAF ASWATYLLTK EVKGSGAGLA AAALLAMVPS YISRSVAGSY DNEAVAIFAL IFTFYLYIKT LNTGSLFYAT
201: LNAIAYFYMV CSWGGYTFII NLIPMHVLLC IVTGRYSPRL YIAYAPLVVL GTLLAALVPV VGFNAVLTSE HFASFLVFII IHVVALVYYI KGILSPKMFK
301: VAVTLVVSIG LVVCLIVVAV LMALVASSPT GGWSGRSLSL LDPTYASKYI PIIASVSEHQ PPTWPSYFMD INVLAFLVPA GIIACFSPLS DASSFVVLYI
401: VMSVYFSGVM VRLMLVLAPA ACIMSGIALS QAFDVFTASI KYQLGRSANS KDDAEDNTST NNAPKDDSSS GKTDKGEEVA KERSSKKGKK KEREPADKPS
501: VKSKIAKKRV LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGN YRIDSEATPT MLNCLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKNFKLTHF EEVFTSHHWM VRIYKLKPQK NRIRGRAKKL KLKTSSGLDS KPAKKNPWI
001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV
Arabidopsis Description
STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.