Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- endoplasmic reticulum 1
- plasma membrane 3
- vacuole 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2B01G190800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19690.1 | TraesCS2B01G190800.1 | AT5G02502.1 | 23493405 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G273900.1 | Wheat | plasma membrane | 99.11 | 97.63 |
| TraesCS3B01G308200.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 77.95 | 94.18 |
| CDY58977 | Canola | endoplasmic reticulum, golgi, vacuole | 13.69 | 87.1 |
| HORVU3Hr1G071140.34 | Barley | golgi, mitochondrion, plasma membrane, plastid | 93.54 | 86.62 |
| KXG33358 | Sorghum | plasma membrane | 82.26 | 84.29 |
| Zm00001d043441_P002 | Maize | plasma membrane | 81.5 | 83.51 |
| TraesCS1A01G340400.1 | Wheat | golgi | 82.26 | 82.47 |
| VIT_11s0016g03320.t01 | Wine grape | plasma membrane | 78.83 | 79.95 |
| GSMUA_Achr7P24990_001 | Banana | plasma membrane | 78.96 | 79.67 |
| CDY58976 | Canola | endoplasmic reticulum, golgi, plastid | 10.65 | 79.25 |
| AT5G19690.1 | Thale cress | plasma membrane | 77.69 | 78.69 |
| CDX70886 | Canola | plasma membrane | 77.06 | 78.15 |
| Solyc12g008360.1.1 | Tomato | nucleus | 76.43 | 78.11 |
| CDX88879 | Canola | plasma membrane | 76.93 | 78.02 |
| Bra006514.1-P | Field mustard | plasma membrane | 76.93 | 78.02 |
| CDX92509 | Canola | plasma membrane | 76.81 | 77.79 |
| KRH74276 | Soybean | nucleus | 76.68 | 77.76 |
| Bra002255.1-P | Field mustard | plastid | 76.81 | 77.59 |
| KRH07262 | Soybean | endoplasmic reticulum | 76.43 | 77.51 |
| VIT_12s0028g03220.t01 | Wine grape | cytosol | 4.31 | 77.27 |
| VIT_11s0016g01590.t01 | Wine grape | endoplasmic reticulum | 11.03 | 73.11 |
| CDY71196 | Canola | endoplasmic reticulum | 33.21 | 69.31 |
| CDY42286 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 63.75 | 64.82 |
| GSMUA_AchrUn_... | Banana | cytosol | 5.7 | 60.0 |
| VIT_07s0005g06040.t01 | Wine grape | golgi, mitochondrion, nucleus | 3.04 | 57.14 |
| KRH25466 | Soybean | cytosol | 2.28 | 52.94 |
| TraesCS2A01G555600.1 | Wheat | golgi | 47.78 | 52.22 |
| VIT_03s0088g00210.t01 | Wine grape | mitochondrion | 11.53 | 45.96 |
Protein Annotations
| MapMan:18.1.1.5.7 | Gene3D:3.40.50.12610 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004576 | GO:GO:0005575 |
| GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006486 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0019538 | InterPro:Oligo_trans_STT3 | PFAM:PF02516 |
| PANTHER:PTHR13872 | PANTHER:PTHR13872:SF37 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS3A01G274600 | EnsemblPlants:TraesCS3A01G274600.1 | SEG:seg |
Description
No Description!
Coordinates
chr3A:-:503818508..503825333
Molecular Weight (calculated)
87670.0 Da
IEP (calculated)
9.507
GRAVY (calculated)
0.284
Length
789 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELEAGSIS MAAGGGGRLR NALSGVLCAF TLLLIGVLAF SIRLFSVIKY ESVIHEFDPY FNYRVTQFLS KSGIYEFWNW FDDRTWYPLG RVIGGTVYPG
101: LTLTAGTIWW LLNSLNIPLS VETVCVFTAP IFSANASWAT YLLTKEAKGH GAGLMAATIL AMVPSYISRS VAGSYDNEAV AIFALIFTFY LYVKTLNTGS
201: LFYATLNALS YFYMVCSWGG YTFIINLIPM HVLLCIVTGR YSSRLYVAYA PLVVLGTLLA ALVPVVGFNA VLTSEHFASF LVFIILHVVA LVYYIKGLLT
301: PRLFKVAMTF VLTVGLALCF AVVAILAALV ASSPTKGWSG RSLSLLDPTY ASKYIPIIAS VSEHQPPTWP SYFMAINVLA FLVPAGIISC FLPLSDASSF
401: LVLYLVTSVY FSGVMVRLML VLAPAVCILS GIALSEAFNV LTRSMKFQRP ISDDTLPTAG DSTPGSSSTA TITTSTKNAN IKKEKMGTIS KERSSKKSRK
501: ETELVGSSPV RPEKEEKLCV LPSEASAMGI LFLIMLCGLY VIHCVWAAAE AYSAPSIVLT SRSHDRLHVY DDFRESYAWL RHNTEVDDKV ASWWDYGYQT
601: TAMANRTVIV DNNTWNNTHI ATVGTAMSSP EKGAWEIFNS LDVKYVLVVF GGLIGYPSDD INKFLWMVRI GGGEFPHIKE QDYLRDGNYR VDAQGTPTML
701: NCLMYKLSYY RFAETDGKGF DRARRYEIGR KHFKLTHFEE VFTTQHWMVR IYKLKPQKNR VRGKLKLKLK SSSKTSLMRK GAGKKNPWR
101: LTLTAGTIWW LLNSLNIPLS VETVCVFTAP IFSANASWAT YLLTKEAKGH GAGLMAATIL AMVPSYISRS VAGSYDNEAV AIFALIFTFY LYVKTLNTGS
201: LFYATLNALS YFYMVCSWGG YTFIINLIPM HVLLCIVTGR YSSRLYVAYA PLVVLGTLLA ALVPVVGFNA VLTSEHFASF LVFIILHVVA LVYYIKGLLT
301: PRLFKVAMTF VLTVGLALCF AVVAILAALV ASSPTKGWSG RSLSLLDPTY ASKYIPIIAS VSEHQPPTWP SYFMAINVLA FLVPAGIISC FLPLSDASSF
401: LVLYLVTSVY FSGVMVRLML VLAPAVCILS GIALSEAFNV LTRSMKFQRP ISDDTLPTAG DSTPGSSSTA TITTSTKNAN IKKEKMGTIS KERSSKKSRK
501: ETELVGSSPV RPEKEEKLCV LPSEASAMGI LFLIMLCGLY VIHCVWAAAE AYSAPSIVLT SRSHDRLHVY DDFRESYAWL RHNTEVDDKV ASWWDYGYQT
601: TAMANRTVIV DNNTWNNTHI ATVGTAMSSP EKGAWEIFNS LDVKYVLVVF GGLIGYPSDD INKFLWMVRI GGGEFPHIKE QDYLRDGNYR VDAQGTPTML
701: NCLMYKLSYY RFAETDGKGF DRARRYEIGR KHFKLTHFEE VFTTQHWMVR IYKLKPQKNR VRGKLKLKLK SSSKTSLMRK GAGKKNPWR
001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV
Arabidopsis Description
STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.