CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
golgi 4
plasma membrane 4
extracellular 2
endoplasmic reticulum 3
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	golgi
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07262	Soybean	endoplasmic reticulum	93.96	93.96
VIT_11s0016g03320.t01	Wine grape	plasma membrane	88.82	88.82
Solyc12g008360.1.1	Tomato	nucleus	83.42	84.07
EES19829	Sorghum	endoplasmic reticulum, golgi, plasma membrane	80.98	80.56
TraesCS1D01G342400.1	Wheat	unclear	75.06	79.13
KXG33358	Sorghum	plasma membrane	78.02	78.83
Zm00001d043441_P002	Maize	plasma membrane	77.89	78.7
TraesCS1A01G340400.1	Wheat	golgi	79.56	78.65
TraesCS1B01G352700.1	Wheat	golgi	79.43	78.43
Os05t0519900-02	Rice	endoplasmic reticulum, golgi	80.85	77.75
TraesCS3A01G274600.1	Wheat	plasma membrane	77.76	76.68
Zm00001d038804_P002	Maize	plasma membrane	81.75	75.71
TraesCS3D01G273900.1	Wheat	plasma membrane	77.64	75.41
TraesCS3B01G308200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	60.03	71.52
HORVU3Hr1G071140.34	Barley	golgi, mitochondrion, plasma membrane, plastid	78.15	71.36
GSMUA_AchrUn_...	Banana	cytosol	6.68	69.33
KRH38891	Soybean	endoplasmic reticulum	48.97	52.26
KRH09394	Soybean	endoplasmic reticulum, mitochondrion	48.97	51.98
KRH25466	Soybean	cytosol	2.19	50.0

Protein Annotations

EntrezGene:100805873	MapMan:18.1.1.5.7	Gene3D:3.40.50.12610	EMBL:ACUP02000011	EnsemblPlantsGene:GLYMA_01G009300	GO:GO:0003674
GO:GO:0003824	GO:GO:0004576	GO:GO:0004579	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150
GO:GO:0008152	GO:GO:0008250	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0018279	GO:GO:0019538	GO:GO:0043687	UniProt:I1J4K6	EnsemblPlants:KRH74276
ProteinID:KRH74276	ProteinID:KRH74276.1	InterPro:Oligo_trans_STT3	PFAM:PF02516	PANTHER:PTHR13872	PANTHER:PTHR13872:SF37
TMHMM:TMhelix	UniParc:UPI00023370AF	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:908484..917161

Molecular Weight (calculated)

86518.6 Da

IEP (calculated)

9.592

GRAVY (calculated)

0.331

Length

778 amino acids

Sequence
(BLAST)

001: MAASNAHNGT TTNSIRHAFG NVLAFFILLL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLTKNGI YDFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTLWWVLNS LNIPLSVETV CVFTAPIFSA FASWATYLLT KEVKGAGAGL TAAVLLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNSIAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSSR LYIAYAPLVV LGTLLAALVP VVGFNAVMTS EHFASFLVFI IIHVVALVHY IKGILSPKMF
301: KVAVALVVSV GLAVCCAMVA VLVALVASSP TKGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVTSVYFSGV MVRLMLVLAP AACILSGIAL SQAFDVFTRS IKLQLPSLLG HSHVDAGEAS SESVVTNDSM KSDKSEDTSK ERTSKKSKKK EKEPVEKPPS
501: KSQIKKRLLV LPLETSIIAI VLLVLLGAFY VVHSVWAAAE AYSAPSIVLT SHSHDGLHVF DDFREAYAWL SHNTEIDDKV ASWWDYGYQT TAMANRTVIV
601: DNNTWNNTHI ATVGTAMSSP EKAAWEIFHS LDVKYVLVVF GGLVGYPSDD INKFLWMVRI GGGVFPHIKE PDYLRDGQYR IDSMATPTML NCLMYKLSYY
701: RFVETDGKAF DRVRRTEIGK KYFKLTHFEE VFTTHHWMVR IYKLKPPKNR IRGKIKKSKS KASSKTTSKR KGLKRNPF

Best Arabidopsis Sequence Match ( AT5G19690.1 )
(BLAST)

001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV

Arabidopsis Description

STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.