Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2B01G190800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19690.1 | TraesCS2B01G190800.1 | AT5G02502.1 | 23493405 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G274600.1 | Wheat | plasma membrane | 94.18 | 77.95 |
| TraesCS3D01G273900.1 | Wheat | plasma membrane | 94.03 | 76.65 |
| VIT_12s0028g03220.t01 | Wine grape | cytosol | 4.9 | 72.73 |
| VIT_11s0016g01590.t01 | Wine grape | endoplasmic reticulum | 12.71 | 69.75 |
| CDY71196 | Canola | endoplasmic reticulum | 39.66 | 68.52 |
| HORVU3Hr1G071140.34 | Barley | golgi, mitochondrion, plasma membrane, plastid | 89.13 | 68.31 |
| CDY58976 | Canola | endoplasmic reticulum, golgi, plastid | 10.87 | 66.98 |
| KXG33358 | Sorghum | plasma membrane | 77.49 | 65.71 |
| Zm00001d043441_P002 | Maize | plasma membrane | 76.88 | 65.19 |
| TraesCS1B01G352700.1 | Wheat | golgi | 77.79 | 64.47 |
| VIT_11s0016g03320.t01 | Wine grape | plasma membrane | 73.66 | 61.83 |
| GSMUA_Achr7P24990_001 | Banana | plasma membrane | 73.35 | 61.25 |
| CDX88879 | Canola | plasma membrane | 72.28 | 60.67 |
| CDX70886 | Canola | plasma membrane | 72.28 | 60.67 |
| Bra006514.1-P | Field mustard | plasma membrane | 72.28 | 60.67 |
| AT5G19690.1 | Thale cress | plasma membrane | 72.13 | 60.46 |
| Solyc12g008360.1.1 | Tomato | nucleus | 71.21 | 60.23 |
| KRH07262 | Soybean | endoplasmic reticulum | 71.67 | 60.15 |
| CDX92509 | Canola | plasma membrane | 71.67 | 60.08 |
| KRH74276 | Soybean | nucleus | 71.52 | 60.03 |
| Bra002255.1-P | Field mustard | plastid | 71.67 | 59.92 |
| GSMUA_AchrUn_... | Banana | cytosol | 6.74 | 58.67 |
| CDY42286 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 67.23 | 56.57 |
| VIT_07s0005g06040.t01 | Wine grape | golgi, mitochondrion, nucleus | 3.52 | 54.76 |
| KRH25466 | Soybean | cytosol | 2.76 | 52.94 |
| CDY58977 | Canola | endoplasmic reticulum, golgi, vacuole | 8.12 | 42.74 |
| VIT_03s0088g00210.t01 | Wine grape | mitochondrion | 12.86 | 42.42 |
| TraesCS2B01G587900.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 45.64 | 41.22 |
Protein Annotations
| MapMan:18.1.1.5.7 | Gene3D:3.40.50.12610 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004576 | GO:GO:0005575 |
| GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006486 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0019538 | InterPro:Oligo_trans_STT3 | PFAM:PF02516 |
| PANTHER:PTHR13872 | PANTHER:PTHR13872:SF37 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS3B01G308200 | EnsemblPlants:TraesCS3B01G308200.1 | SEG:seg |
Description
No Description!
Coordinates
chr3B:-:495471688..495477198
Molecular Weight (calculated)
72681.3 Da
IEP (calculated)
9.636
GRAVY (calculated)
0.103
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELEAGSIS MAAGGGGRLR NALSGVLCAF TLLLIGVLAF SIRLFSVIKY ESVIHEFDPY FNYRVTQFLS KSGIYEFWNW FDDRTWYPLG RVIGGTVAGE
101: DGRARGGRGS WDDRWKVVLG TLLAALVPVV GFNAILTSEH FASFLVFIIL HVVALVYYIK GLLTPRLFKV AMTFVLTVGL ALCFAVVAVL AALVASSPTK
201: GWSGRSLSLL DPTYASKYIP IIASVSEHQP PTWPSYFMAI NVLAFLVPAG IISCFLPLSD ASSFLVLYLV TSVYFSGVMV RLMLVLAPAV CILSGIALSE
301: AFNVLTRSMK FQRPISDDTL PTGGDSTPGS SSTATITTST KNANIKKEKM GTISKERSSK KSRKETELVG SSPVRPEKEE KLCVLPSEAS AMGILFLIML
401: CGLYVIHCVW AAAEAYSAPS IVLTSRSHNG LHVYDDFRES YAWLRHNTEV DDKVASWWDY GYQTTAMANR TVIVDNNTWN NTHIATVGTA MSSPEKGAWE
501: IFNSLDVKYV LVVFGGLSGY PSDDINKFLW MVRIGGGEFP HIKEQDYLRD GNYRVDAQGT PTMLNCLMYK LCYYRFAETD GKGFDRARKY EIGRKHFKLT
601: HFEEVFTTQH WMVRIYKLKP QKNRVRGKLK LKLKYSSKTS LMRKGAGKKN PWQ
101: DGRARGGRGS WDDRWKVVLG TLLAALVPVV GFNAILTSEH FASFLVFIIL HVVALVYYIK GLLTPRLFKV AMTFVLTVGL ALCFAVVAVL AALVASSPTK
201: GWSGRSLSLL DPTYASKYIP IIASVSEHQP PTWPSYFMAI NVLAFLVPAG IISCFLPLSD ASSFLVLYLV TSVYFSGVMV RLMLVLAPAV CILSGIALSE
301: AFNVLTRSMK FQRPISDDTL PTGGDSTPGS SSTATITTST KNANIKKEKM GTISKERSSK KSRKETELVG SSPVRPEKEE KLCVLPSEAS AMGILFLIML
401: CGLYVIHCVW AAAEAYSAPS IVLTSRSHNG LHVYDDFRES YAWLRHNTEV DDKVASWWDY GYQTTAMANR TVIVDNNTWN NTHIATVGTA MSSPEKGAWE
501: IFNSLDVKYV LVVFGGLSGY PSDDINKFLW MVRIGGGEFP HIKEQDYLRD GNYRVDAQGT PTMLNCLMYK LCYYRFAETD GKGFDRARKY EIGRKHFKLT
601: HFEEVFTTQH WMVRIYKLKP QKNRVRGKLK LKLKYSSKTS LMRKGAGKKN PWQ
001: MGGKSEPAKS ESMATKPDLL NTSFFSFKSL KLKTKQQELL LRISILGLVY ILAFIARLFS VLRYESMIHE FDPYFNYRTT LFLTEKGFYE FWNWFDSESW
101: YPLGRIIGGT LYPGLMVTAA LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AVLIAICPGY ISRSVAGSYD NEAVAIFALL
201: LTFYLFVKAV NTGSLAWALA SAFGYFYMVS AWGGYVFIIN LVPLYVLVLL ITGRYSMRLY IAYNCMYILG MLLAMQIRFV GFQHVQSGEH MGAMGVFLLM
301: QVFYFLDWVK YQLNDTKLFQ TFLRITVTSA ILVGGVAVGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY
401: FCFKRLTDAT IFIVMYGLTS LYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLTSLLRTK QKVSQTGSTK GAGSSKASSK VTLDQSQPFQ KNGAIALLVG
501: VFYLLSRYAI HCTWVTAEAY SSPSIVLAAR GAHGNRIIFD DYREAYYWLR QNTATDAKIM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE
601: DDAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEFRV DKGASPKMLN CLMYKLCYYR FGELTTEYGK PPGYDRARGV
701: EIGNKDIKLE HLEEAYTTSN WIVRIYRVKP PTNRL
101: YPLGRIIGGT LYPGLMVTAA LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AVLIAICPGY ISRSVAGSYD NEAVAIFALL
201: LTFYLFVKAV NTGSLAWALA SAFGYFYMVS AWGGYVFIIN LVPLYVLVLL ITGRYSMRLY IAYNCMYILG MLLAMQIRFV GFQHVQSGEH MGAMGVFLLM
301: QVFYFLDWVK YQLNDTKLFQ TFLRITVTSA ILVGGVAVGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY
401: FCFKRLTDAT IFIVMYGLTS LYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLTSLLRTK QKVSQTGSTK GAGSSKASSK VTLDQSQPFQ KNGAIALLVG
501: VFYLLSRYAI HCTWVTAEAY SSPSIVLAAR GAHGNRIIFD DYREAYYWLR QNTATDAKIM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE
601: DDAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEFRV DKGASPKMLN CLMYKLCYYR FGELTTEYGK PPGYDRARGV
701: EIGNKDIKLE HLEEAYTTSN WIVRIYRVKP PTNRL
Arabidopsis Description
STT3BGlycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PVA0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.