Factsheet for VIT_11s0016g03320.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
golgi 4
mitochondrion 1
plasma membrane 5
extracellular 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74276	Soybean	nucleus	88.82	88.82
VIT_07s0005g06040.t01	Wine grape	golgi, mitochondrion, nucleus	4.76	88.1
KRH07262	Soybean	endoplasmic reticulum	87.66	87.66
VIT_12s0028g03220.t01	Wine grape	cytosol	4.88	86.36
Solyc12g008360.1.1	Tomato	nucleus	84.7	85.36
EES19829	Sorghum	endoplasmic reticulum, golgi, plasma membrane	82.78	82.35
VIT_11s0016g01590.t01	Wine grape	endoplasmic reticulum	12.47	81.51
TraesCS1D01G342400.1	Wheat	unclear	76.61	80.76
TraesCS1A01G340400.1	Wheat	golgi	81.62	80.69
TraesCS1B01G352700.1	Wheat	golgi	81.62	80.58
KXG33358	Sorghum	plasma membrane	79.05	79.87
Os05t0519900-02	Rice	endoplasmic reticulum, golgi	83.03	79.85
Zm00001d043441_P002	Maize	plasma membrane	78.92	79.74
TraesCS3A01G274600.1	Wheat	plasma membrane	79.95	78.83
TraesCS3D01G273900.1	Wheat	plasma membrane	79.95	77.65
Zm00001d038804_P002	Maize	plasma membrane	82.9	76.79
TraesCS3B01G308200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	61.83	73.66
HORVU3Hr1G071140.34	Barley	golgi, mitochondrion, plasma membrane, plastid	79.43	72.54
GSMUA_AchrUn_...	Banana	cytosol	6.94	72.0
VIT_03s0088g00210.t01	Wine grape	mitochondrion	13.24	52.02
VIT_17s0053g00140.t01	Wine grape	plasma membrane	48.97	51.42

Protein Annotations

EntrezGene:100232931	wikigene:100232931	MapMan:18.1.1.5.7	Gene3D:3.40.50.12610	ProteinID:AAP49699	ProteinID:AAP49699.1
EMBL:AY226831	ProteinID:CBI28016	ProteinID:CBI28016.3	UniProt:D7TBI1	EMBL:FN595756	GO:GO:0003674
GO:GO:0003824	GO:GO:0004576	GO:GO:0004579	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150
GO:GO:0008152	GO:GO:0008250	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0018279	GO:GO:0019538	GO:GO:0043687	EntrezGene:LTM1	wikigene:LTM1
InterPro:Oligo_trans_STT3	PFAM:PF02516	PANTHER:PTHR13872	PANTHER:PTHR13872:SF37	TIGR:TC63015	TMHMM:TMhelix
UniParc:UPI00019842C5	ArrayExpress:VIT_11s0016g03320	EnsemblPlantsGene:VIT_11s0016g03320	EnsemblPlants:VIT_11s0016g03320.t01	unigene:Vvi.9795	RefSeq:XP_002280521
RefSeq:XP_002280521.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:2676751..2693341

Molecular Weight (calculated)

86812.7 Da

IEP (calculated)

9.555

GRAVY (calculated)

0.303

Length

778 amino acids

Sequence
(BLAST)

001: MAASEDSNQS KIRAVFGSVL SFFILILIGV LAFSIRLFSV IKYESVIHEF DPYFNYRVTQ FLTKNGIYDF WNWFDDRTWY PLGRVIGGTV YPGLTLTAGS
101: IWWLLNSLNI PLSVETVCVF TAPIFSANAA WATYLLTKEV KGTGAGLTAA ALLAMVPSYI SRSVAGSYDN EAVAIFALIF TFYLYIKTLN TGSLFYATLN
201: AITYFYMVCS WGGYTFIINL IPMHVLLCIV TGRYSSRLYI AYAPLVVLGT LLAALVPVVG FNAVMTSEHF ASFLVFIIIH VVALVYYIKG ILSPKMFKVA
301: VTLVVSVGLV VCCAVVAVLI ALVASSPTKG WSGRSLSLLD PTYASKYIPI IASVSEHQPP TWPSYFMDIN VLAFLVPAGI VACFLPLSDA SSFVVLYIVT
401: SVYFSGVMVR LMLVLAPAAC ILSGIALSEA FDVLTRSIKF QLPGLSENSQ IDAGDTTSSS VVTQNDAAKT NKNEDTLKER PSRKNRKKEK EHVEKTSIKS
501: QIKKRLLVLP LEASVAAIFL LVLLGAFYVV HCVWAAAEAY SAPSIVLTSH SHDGLHVFDD FREAYAWLRH NTEVDDKVAS WWDYGYQTTA MANRTVIVDN
601: NTWNNTHIAT VGTAMSSPEK AAWEIFNSLD VKYVLVVFGG LVGYPSDDIN KFLWMVRIGG GVFPHIREPD YLRDGQYRID SQATPTMLNC LMYKLSYFRF
701: VETDGKGFDR VRRTEIGKKY FKLTHFEEVF TTHHWMVRIY KLKPPKNRIR VKTKKSKSKA SSTTSSKRSG KRKKNPWQ

Best Arabidopsis Sequence Match ( AT5G19690.1 )
(BLAST)

001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV

Arabidopsis Description

STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.