Factsheet for TraesCS3D01G273900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
iPSORT:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2B01G190800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19690.1	TraesCS2B01G190800.1	AT5G02502.1	23493405

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G274600.1	Wheat	plasma membrane	97.63	99.11
TraesCS3B01G308200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	76.65	94.03
CDY58977	Canola	endoplasmic reticulum, golgi, vacuole	13.48	87.1
HORVU3Hr1G071140.34	Barley	golgi, mitochondrion, plasma membrane, plastid	92.38	86.85
KXG33358	Sorghum	plasma membrane	80.77	84.03
Zm00001d043441_P002	Maize	plasma membrane	80.03	83.25
TraesCS1D01G342400.1	Wheat	unclear	76.28	82.79
VIT_11s0016g03320.t01	Wine grape	plasma membrane	77.65	79.95
GSMUA_Achr7P24990_001	Banana	plasma membrane	77.78	79.67
AT5G19690.1	Thale cress	plasma membrane	76.28	78.43
CDX70886	Canola	plasma membrane	76.15	78.41
CDY58976	Canola	endoplasmic reticulum, golgi, plastid	10.36	78.3
CDX88879	Canola	plasma membrane	76.03	78.28
Bra006514.1-P	Field mustard	plasma membrane	76.03	78.28
Solyc12g008360.1.1	Tomato	nucleus	75.28	78.11
CDX92509	Canola	plasma membrane	75.66	77.79
KRH74276	Soybean	nucleus	75.41	77.64
Bra002255.1-P	Field mustard	plastid	75.66	77.59
KRH07262	Soybean	endoplasmic reticulum	75.16	77.38
VIT_12s0028g03220.t01	Wine grape	cytosol	4.12	75.0
VIT_11s0016g01590.t01	Wine grape	endoplasmic reticulum	10.74	72.27
CDY71196	Canola	endoplasmic reticulum	32.71	69.31
CDY42286	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	62.92	64.95
GSMUA_AchrUn_...	Banana	cytosol	5.74	61.33
VIT_07s0005g06040.t01	Wine grape	golgi, mitochondrion, nucleus	3.0	57.14
KRH25466	Soybean	cytosol	2.25	52.94
TraesCS2D01G558800.1	Wheat	plasma membrane	47.44	52.56
VIT_03s0088g00210.t01	Wine grape	mitochondrion	11.36	45.96

Protein Annotations

MapMan:18.1.1.5.7	Gene3D:3.40.50.12610	GO:GO:0003674	GO:GO:0003824	GO:GO:0004576	GO:GO:0005575
GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0019538	InterPro:Oligo_trans_STT3	PFAM:PF02516
PANTHER:PTHR13872	PANTHER:PTHR13872:SF37	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G273900	EnsemblPlants:TraesCS3D01G273900.1	SEG:seg

Description

No Description!

Coordinates

chr3D:+:379823087..379830140

Molecular Weight (calculated)

88857.4 Da

IEP (calculated)

9.354

GRAVY (calculated)

0.282

Length

801 amino acids

Sequence
(BLAST)

001: MAELEAGSIS MAAGGGGRLR NALSGMLCAF ALLLIGVLAF SIRLFSVIKY ESVIHEFDPY FNYRVTQFLS KSGIYEFWNW FDDRTWYPLG RVIGGTVYPG
101: LTLTAGTIWW LLNSLNIPLS VETVCVFTAP IFSANASWAT YLLTKEAKGH GAGLMAATIL AMVPSYISRS VAGSYDNEAV AIFALIFTFY LYVKTLNTGS
201: LFYATLNALS YFYMVCSWGG YTFIINLIPM HVLLCIVTGR YSSRLYVAYA PLVVLGTLLA ALVPVVGFNA VLTSEHFASF LVFIILHVVA LVYYIKGLLT
301: PRLFKVAMTF VLTVGLALCL AVVAILAALV ASSPTKGWSG RSLSLLDPTY ASKYIPIIAS VSEHQPPTWP SYFMAINVLA FLVPAGIISC FLPLSDASSF
401: SVLYLVTSVY FSGVMVRLML VLAPAVCILS GIALSEAFNV LTRSMKFQRP ISDDTLPTAG DSTPGSSSTA TITTSTKNAN IKKEKMGTIS KERSSKKSRK
501: ETELVGSSPV RPEKEEKLCV LPSEASAMGI LFLIMLCGLY VIHCVWAAAE AYSAPSIVLT SRSHDGLHVY DDFRESYAWL RHNTEVDDKV ASWWDYGYQT
601: TAMANRTVIV DNNTWNNTHI ATVGTAMSSP EKGAWEIFNS LDVKYVLVVF GGLIGYPSDD INKFLWMVRI GGGEFPHIKE QDYLRDGNYR VDAQGTPTML
701: NCLMYKLCYY RFAETDGKGF DRARRYEIGR KHFKLTHFEE VFTTQHWMVR IYKLKPQKNR VRGKLKLKLK SVSQTTLQLA YNHSSKTSLM RKGAGKKNPW
801: Q

Best Arabidopsis Sequence Match ( AT5G19690.1 )
(BLAST)

001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV

Arabidopsis Description

STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.