Factsheet for Solyc12g008360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
golgi 3
endoplasmic reticulum 3
plasma membrane 5
extracellular 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	golgi
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58977	Canola	endoplasmic reticulum, golgi, vacuole	14.12	87.9
VIT_11s0016g03320.t01	Wine grape	plasma membrane	85.36	84.7
KRH74276	Soybean	nucleus	84.07	83.42
KRH07262	Soybean	endoplasmic reticulum	83.81	83.16
AT5G19690.1	Thale cress	plasma membrane	82.9	82.16
Bra006514.1-P	Field mustard	plasma membrane	82.38	81.75
CDX88879	Canola	plasma membrane	82.38	81.75
CDX70886	Canola	plasma membrane	82.12	81.49
CDX92509	Canola	plasma membrane	82.12	81.39
Bra002255.1-P	Field mustard	plastid	82.25	81.31
EES19829	Sorghum	endoplasmic reticulum, golgi, plasma membrane	81.87	80.82
TraesCS1D01G342400.1	Wheat	unclear	76.3	79.81
TraesCS1A01G340400.1	Wheat	golgi	80.7	79.16
TraesCS1B01G352700.1	Wheat	golgi	80.7	79.06
KXG33358	Sorghum	plasma membrane	78.76	78.96
CDY58976	Canola	endoplasmic reticulum, golgi, plastid	10.75	78.3
Os05t0519900-02	Rice	endoplasmic reticulum, golgi	81.74	78.0
Zm00001d043441_P002	Maize	plasma membrane	77.72	77.92
TraesCS3A01G274600.1	Wheat	plasma membrane	78.11	76.43
CDY71196	Canola	endoplasmic reticulum	36.92	75.4
TraesCS3D01G273900.1	Wheat	plasma membrane	78.11	75.28
Zm00001d038804_P002	Maize	plasma membrane	81.09	74.52
HORVU3Hr1G071140.34	Barley	golgi, mitochondrion, plasma membrane, plastid	78.76	71.36
TraesCS3B01G308200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	60.23	71.21
GSMUA_AchrUn_...	Banana	cytosol	6.74	69.33
CDY42286	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	68.52	68.17
Solyc03g098600.2.1	Tomato	nucleus, plastid, unclear	48.45	51.59

Protein Annotations

MapMan:18.1.1.5.7	Gene3D:3.40.50.12610	GO:GO:0003674	GO:GO:0003824	GO:GO:0004576	GO:GO:0004579
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005975
GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0008250	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0018279	GO:GO:0019538
GO:GO:0043687	UniProt:K4DBS4	InterPro:Oligo_trans_STT3	PFAM:PF02516	PANTHER:PTHR13872	PANTHER:PTHR13872:SF37
EnsemblPlantsGene:Solyc12g008360.1	EnsemblPlants:Solyc12g008360.1.1	TMHMM:TMhelix	UniParc:UPI00027693FD	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:1785951..1798278

Molecular Weight (calculated)

85814.6 Da

IEP (calculated)

9.495

GRAVY (calculated)

0.312

Length

772 amino acids

Sequence
(BLAST)

001: MAASSDTVTP SSLRLAFGNV FSLFILILIG VLAFSIRIFS VIKYESVIHE FDPYFNYRVT QFLTKNGIYD FWNWFDDRTW YPLGRVIGGT VYPGLTLTAG
101: TLWWIINSLN IPLSVETVCV FTAPTFSAFA AWATYLLTKE VKGVGAGLTA AALLAMVPSY ISRSVAGSYD NEAVAIFALI FTFYLYIKTL NTGSLFYATL
201: NALSYFYMVC SWGGYTFIIN LIPMHALLCI VTGRYSSRLY IAYAPLVILG TLLAALVPVV GFNAVMTSEH FASFLVFLIL NVVGLVYYIK GMLTPKMFKV
301: AVTLVVSAGL IVCCAVVAVL VALVASSPTK GWSGRSLSLL DPTYASKYIP IIASVSEHQP PTWPSYFMDI NVLAFLVPAG IIACFLPLTD ASSFVILYLV
401: TSVYFSGVMV RLMLVLAPAA CIMSGIALSS AFGVFTRSIK FASTGKQADA GDNGDGVTQN DVVKSDRNEE LPKEKASRKK KKEKENVEKV PIANKKSEKR
501: LLMLPMEASF VAILLLVLLG AFYVVHCVWA AAEAYSAPSI VLTSQSHDGL HVFDDFREAY AWLSHNTDVD DKVASWWDYG YQTTAMANRT VIVDNNTWNN
601: THIATVGTAM SSPEKAAWEI FNSLDVKYVL VVFGGLVGYP SDDINKFLWM VRIGGGVFPH IKEPDYLRDG QYRIDSMATP TMLNSLMYKL SYYRFVETDG
701: KGYDRVRRTE IGKKHFKLTH FEEVFTTHHW MVRLYKLKPP KNRIRGKTKK SKSKATSSSS RRSATQKKNP WQ

Best Arabidopsis Sequence Match ( AT5G19690.1 )
(BLAST)

001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV

Arabidopsis Description

STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.