Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19690.1 | CDX80827 | AT5G02502.1 | 23493405 |
| AT5G19690.1 | CDY10444 | AT5G02502.1 | 23493405 |
| AT5G19690.1 | CDY55545 | AT5G02502.1 | 23493405 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006514.1-P | Field mustard | plasma membrane | 99.87 | 99.87 |
| CDX70886 | Canola | plasma membrane | 98.97 | 98.97 |
| CDY58977 | Canola | endoplasmic reticulum, golgi, vacuole | 15.55 | 97.58 |
| CDX92509 | Canola | plasma membrane | 94.34 | 94.22 |
| AT5G19690.1 | Thale cress | plasma membrane | 93.57 | 93.45 |
| CDY71196 | Canola | endoplasmic reticulum | 44.73 | 92.06 |
| CDY58976 | Canola | endoplasmic reticulum, golgi, plastid | 12.47 | 91.51 |
| Solyc12g008360.1.1 | Tomato | nucleus | 81.75 | 82.38 |
| TraesCS1D01G342400.1 | Wheat | unclear | 76.09 | 80.22 |
| EES19829 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 80.46 | 80.05 |
| TraesCS1A01G340400.1 | Wheat | golgi | 80.46 | 79.54 |
| TraesCS1B01G352700.1 | Wheat | golgi | 80.46 | 79.44 |
| KXG33358 | Sorghum | plasma membrane | 78.41 | 79.22 |
| CDY44935 | Canola | extracellular, golgi, plasma membrane | 9.77 | 79.17 |
| CDY42286 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 78.15 | 78.35 |
| Zm00001d043441_P002 | Maize | plasma membrane | 77.51 | 78.31 |
| Os05t0519900-02 | Rice | endoplasmic reticulum, golgi | 80.98 | 77.87 |
| TraesCS3A01G274600.1 | Wheat | plasma membrane | 78.02 | 76.93 |
| TraesCS3D01G273900.1 | Wheat | plasma membrane | 78.28 | 76.03 |
| Zm00001d038804_P002 | Maize | plasma membrane | 80.21 | 74.29 |
| TraesCS3B01G308200.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 60.67 | 72.28 |
| HORVU3Hr1G071140.34 | Barley | golgi, mitochondrion, plasma membrane, plastid | 78.79 | 71.95 |
| GSMUA_AchrUn_... | Banana | cytosol | 5.91 | 61.33 |
| CDX73294 | Canola | endoplasmic reticulum, golgi, vacuole | 5.27 | 56.94 |
| KRH25466 | Soybean | cytosol | 2.31 | 52.94 |
| VIT_07s0005g06040.t01 | Wine grape | golgi, mitochondrion, nucleus | 2.83 | 52.38 |
| CDX93729 | Canola | peroxisome, plasma membrane, plastid, vacuole | 47.81 | 51.31 |
| CDY15314 | Canola | plasma membrane | 47.56 | 51.03 |
| CDY28395 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 30.72 | 49.18 |
| CDX73295 | Canola | endoplasmic reticulum, golgi, plasma membrane | 25.32 | 47.36 |
| VIT_03s0088g00210.t01 | Wine grape | mitochondrion | 10.93 | 42.93 |
Protein Annotations
| MapMan:18.1.1.5.7 | Gene3D:3.40.50.12610 | GO:A0A078DJQ3 | EnsemblPlants:CDX88879 | ProteinID:CDX88879 | ProteinID:CDX88879.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004576 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0006464 |
| GO:GO:0006486 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00148968001 | InterPro:Oligo_trans_STT3 | PFAM:PF02516 |
| PANTHER:PTHR13872 | PANTHER:PTHR13872:SF37 | TMHMM:TMhelix | UniPathway:UPA00378 | UniParc:UPI0004EE4669 | SEG:seg |
Description
BnaA03g07700D
Coordinates
chrLK031856:-:1412684..1418098
Molecular Weight (calculated)
86210.3 Da
IEP (calculated)
9.268
GRAVY (calculated)
0.340
Length
778 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVESLPPG TPSAMRNAFG TVLSALILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWVLNA INIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNAIAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILTPKMF
301: KVAVTLVVSI GLVVCLIVVA VLVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLSSKSK DDAEDNTSTK NAPKDDASSG KADKGEEVAK ERLSKKGKKK EREPAEKPSV
501: KSKIVKKKAL VLPLEASIVA LLLLIMLGAF YVIHCVWAAA EAYSAPSIVL TSQSHDGLHV FDDFRESYAW LSHNTDVDDK VASWWDYGYQ TTAMANRTVI
601: VDNNTWNNTH IATVGTAMSS PEKAAWEIFN SLDVKYVLVV FGGVIGYPSD DINKFLWMVR IGGGEFPHIK EADYLRDGQY RIDSEATPTM LNCLMYKLCY
701: YRFVETDGKG YDRVRRTEIG KKHFKLTHFE EVFTSHHWMV RIYKLKPQKN RIRGRVKKLK QKTTSGVSSK SVKKNPWM
101: AGTIWWVLNA INIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNAIAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILTPKMF
301: KVAVTLVVSI GLVVCLIVVA VLVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLSSKSK DDAEDNTSTK NAPKDDASSG KADKGEEVAK ERLSKKGKKK EREPAEKPSV
501: KSKIVKKKAL VLPLEASIVA LLLLIMLGAF YVIHCVWAAA EAYSAPSIVL TSQSHDGLHV FDDFRESYAW LSHNTDVDDK VASWWDYGYQ TTAMANRTVI
601: VDNNTWNNTH IATVGTAMSS PEKAAWEIFN SLDVKYVLVV FGGVIGYPSD DINKFLWMVR IGGGEFPHIK EADYLRDGQY RIDSEATPTM LNCLMYKLCY
701: YRFVETDGKG YDRVRRTEIG KKHFKLTHFE EVFTSHHWMV RIYKLKPQKN RIRGRVKKLK QKTTSGVSSK SVKKNPWM
001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV
Arabidopsis Description
STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.