Factsheet for VIT_03s0088g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19690.1	VIT_08s0007g00090.t01	AT5G02502.1	23493405

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g06040.t01	Wine grape	golgi, mitochondrion, nucleus	19.19	90.48
VIT_11s0016g01590.t01	Wine grape	endoplasmic reticulum	24.24	40.34
GSMUA_AchrUn_...	Banana	cytosol	14.65	38.67
KRH25466	Soybean	cytosol	4.55	26.47
CDY71196	Canola	endoplasmic reticulum	36.36	19.05
VIT_11s0016g03320.t01	Wine grape	plasma membrane	52.02	13.24
TraesCS3B01G308200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	42.42	12.86
TraesCS1D01G342400.1	Wheat	unclear	47.47	12.74
TraesCS1A01G340400.1	Wheat	golgi	47.98	12.07
TraesCS1B01G352700.1	Wheat	golgi	47.98	12.06
EES19829	Sorghum	endoplasmic reticulum, golgi, plasma membrane	47.47	12.02
Os05t0519900-02	Rice	endoplasmic reticulum, golgi	47.98	11.74
TraesCS3A01G274600.1	Wheat	plasma membrane	45.96	11.53
TraesCS3D01G273900.1	Wheat	plasma membrane	45.96	11.36
KXG33358	Sorghum	plasma membrane	43.43	11.17
CDX92509	Canola	plasma membrane	43.94	11.17
AT5G19690.1	Thale cress	plasma membrane	43.94	11.17
Bra002255.1-P	Field mustard	plastid	43.94	11.14
Zm00001d038804_P002	Maize	plasma membrane	46.97	11.07
Zm00001d043441_P002	Maize	plasma membrane	42.93	11.04
CDX88879	Canola	plasma membrane	42.93	10.93
CDX70886	Canola	plasma membrane	42.93	10.93
Bra006514.1-P	Field mustard	plasma membrane	42.93	10.93
HORVU3Hr1G071140.34	Barley	golgi, mitochondrion, plasma membrane, plastid	45.96	10.68
CDY42286	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	41.41	10.57
VIT_17s0053g00140.t01	Wine grape	plasma membrane	38.89	10.39
VIT_12s0028g03220.t01	Wine grape	cytosol	2.02	9.09
CDY58976	Canola	endoplasmic reticulum, golgi, plastid	1.52	2.83
CDY58977	Canola	endoplasmic reticulum, golgi, vacuole	1.52	2.42

Protein Annotations

ArrayExpress:VIT_03s0088g00210	EMBL:FN595512	EnsemblPlants:VIT_03s0088g00210.t01	EnsemblPlantsGene:VIT_03s0088g00210	PANTHER:PTHR13872	PANTHER:PTHR13872:SF37
ProteinID:CBI25138	ProteinID:CBI25138.3	SEG:seg	UniParc:UPI0001BE25E6	UniProt:D7T3Q6	MapMan:35.1

Description

No Description!

Coordinates

chr3:+:8232628..8239401

Molecular Weight (calculated)

23018.8 Da

IEP (calculated)

10.775

GRAVY (calculated)

-0.222

Length

198 amino acids

Sequence
(BLAST)

001: MLKSGLRAFL SLRLHLNISD KELTHLQVVP GKKLVKHLQK EVARLEAELR SPEPSSFACL RTLLMEKDLK IQQVNFNSLD VKYVLVVFGC LVGYPSDDIN
101: KFLWMVRIGG GVFPHIKEPD YLVSCCLLFF MRHVFTTHHW MVRIYKLKPP KNRIRVKIKK SKSKASSTTS SKKEVEKKRR IPGNERHFQK MLSPISYL

Best Arabidopsis Sequence Match ( AT5G19690.2 )
(BLAST)

001: MVIKYESVIH EFDPYFNYRV TQFLSKNGIY EFWNWFDDRT WYPLGRVIGG TVYPGLTLTA GTIWWGLNSL NIPLSVETVC VFTAPVFSAF ASWATYLLTK
101: EVKGSGAGLA AAALLAMVPS YISRSVAGSY DNEAVAIFAL IFTFYLYIKT LNTGSLFYAT LNALAYFYMV CSWGGYTFII NLIPMHVLLC IVTGRYSPRL
201: YIAYAPLVVL GTLLAALVPV VGFNAVLTSE HFASFLVFII IHVVALVYYI KGILSPKMFK VAVTLVVSIG MVVCFIVVAI LVALVASSPT GGWSGRSLSL
301: LDPTYASKYI PIIASVSEHQ PPTWPSYFMD INVLAFLVPA GIIACFSPLS DASSFVVLYI VMSVYFSGVM VRLMLVLAPA ACIMSGIALS QAFDVFTGSI
401: KYQLGASSNS TDDAEDNTST NNAPKDDVSA GKTDKGEEIV KERSSKKGKK KEREPADKPS VKAKIKKKAL VLPLEASIVA LLLLIMLGAF YVIHCVWAAA
501: EAYSAPSIVL TSQSRDGLHV FDDFRESYAW LSHNTDVDDK VASWWDYGYQ TTAMANRTVI VDNNTWNNTH IATVGTAMSS PEKAAWEIFN SLDVKYVLVV
601: FGGLIGYPSD DINKFLWMVR IGGGVFPHIK EADYLRDGQY RIDSEATPTM LNSLMYKLSY YRFVETDGKG YDRVRRTEIG KKHFKLTHFE EVFTSHHWMV
701: RLYKLKPPRN RIRGKAKKLK SKTSSGLSSK SAKKNPWV

Arabidopsis Description

STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.