Factsheet for VIT_07s0005g06040.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, nucleus

Predictor Summary:

nucleus 3
golgi 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19690.1	VIT_08s0007g00090.t01	AT5G02502.1	23493405

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	66.67	37.33
VIT_03s0088g00210.t01	Wine grape	mitochondrion	90.48	19.19
CDY71196	Canola	endoplasmic reticulum	52.38	5.82
VIT_11s0016g03320.t01	Wine grape	plasma membrane	88.1	4.76
TraesCS1D01G342400.1	Wheat	unclear	64.29	3.66
TraesCS1A01G340400.1	Wheat	golgi	66.67	3.56
TraesCS1B01G352700.1	Wheat	golgi	66.67	3.55
TraesCS3B01G308200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	54.76	3.52
Os05t0519900-02	Rice	endoplasmic reticulum, golgi	61.9	3.21
EES19829	Sorghum	endoplasmic reticulum, golgi, plasma membrane	59.52	3.2
TraesCS3A01G274600.1	Wheat	plasma membrane	57.14	3.04
TraesCS3D01G273900.1	Wheat	plasma membrane	57.14	3.0
CDY42286	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	54.76	2.96
Zm00001d038804_P002	Maize	plasma membrane	57.14	2.86
KXG33358	Sorghum	plasma membrane	52.38	2.86
CDX88879	Canola	plasma membrane	52.38	2.83
CDX70886	Canola	plasma membrane	52.38	2.83
Bra006514.1-P	Field mustard	plasma membrane	52.38	2.83
CDX92509	Canola	plasma membrane	52.38	2.82
AT5G19690.1	Thale cress	plasma membrane	52.38	2.82
Bra002255.1-P	Field mustard	plastid	52.38	2.82
HORVU3Hr1G071140.34	Barley	golgi, mitochondrion, plasma membrane, plastid	57.14	2.82
Zm00001d043441_P002	Maize	plasma membrane	50.0	2.73
VIT_12s0028g03220.t01	Wine grape	cytosol	2.38	2.27
VIT_17s0053g00140.t01	Wine grape	plasma membrane	33.33	1.89
VIT_11s0016g01590.t01	Wine grape	endoplasmic reticulum	2.38	0.84
KRH25466	Soybean	cytosol	0.0	0.0
CDY58977	Canola	endoplasmic reticulum, golgi, vacuole	0.0	0.0
CDY58976	Canola	endoplasmic reticulum, golgi, plastid	0.0	0.0

Protein Annotations

ArrayExpress:VIT_07s0005g06040	EMBL:FN596502	EnsemblPlants:VIT_07s0005g06040.t01	EnsemblPlantsGene:VIT_07s0005g06040	ProteinID:CBI37297	ProteinID:CBI37297.3
SEG:seg	UniParc:UPI0001BE4A96	UniProt:D7U3H8	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr7:-:10774970..10775246

Molecular Weight (calculated)

4974.3 Da

IEP (calculated)

12.377

GRAVY (calculated)

-1.100

Length

42 amino acids

Sequence
(BLAST)

1: MKVFTTHHWM VRIYKLKPPK NRIRVKTKKS KSKASSTTSS KK

Best Arabidopsis Sequence Match ( AT5G19690.1 )
(BLAST)

001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV

Arabidopsis Description

STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.