Factsheet for TraesCS1D01G342400.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 1
golgi 4
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	plastid, secretory
iPSORT:	plastid
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2B01G190800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19690.1	TraesCS2B01G190800.1	AT5G02502.1	23493405

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G352700.1	Wheat	golgi	97.56	91.37
TraesCS1A01G340400.1	Wheat	golgi	96.48	90.47
CDY58977	Canola	endoplasmic reticulum, golgi, vacuole	14.5	86.29
EES19829	Sorghum	endoplasmic reticulum, golgi, plasma membrane	88.89	83.89
Os05t0519900-02	Rice	endoplasmic reticulum, golgi	89.43	81.58
GSMUA_Achr7P24990_001	Banana	plasma membrane	82.38	77.75
Zm00001d038804_P002	Maize	plasma membrane	88.21	77.5
VIT_11s0016g03320.t01	Wine grape	plasma membrane	80.76	76.61
VIT_11s0016g01590.t01	Wine grape	endoplasmic reticulum	12.33	76.47
Solyc12g008360.1.1	Tomato	nucleus	79.81	76.3
TraesCS3D01G273900.1	Wheat	plasma membrane	82.79	76.28
CDX88879	Canola	plasma membrane	80.22	76.09
Bra006514.1-P	Field mustard	plasma membrane	80.22	76.09
AT5G19690.1	Thale cress	plasma membrane	80.22	75.99
CDX70886	Canola	plasma membrane	80.08	75.96
CDX92509	Canola	plasma membrane	79.95	75.74
Bra002255.1-P	Field mustard	plastid	80.08	75.67
CDY71196	Canola	endoplasmic reticulum	38.62	75.4
KRH74276	Soybean	nucleus	79.13	75.06
VIT_12s0028g03220.t01	Wine grape	cytosol	4.47	75.0
KRH07262	Soybean	endoplasmic reticulum	78.86	74.81
GSMUA_AchrUn_...	Banana	cytosol	7.05	69.33
VIT_07s0005g06040.t01	Wine grape	golgi, mitochondrion, nucleus	3.66	64.29
CDY42286	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	66.53	63.27
KRH25466	Soybean	cytosol	2.57	55.88
TraesCS2D01G558800.1	Wheat	plasma membrane	48.24	49.24
VIT_03s0088g00210.t01	Wine grape	mitochondrion	12.74	47.47
CDY58976	Canola	endoplasmic reticulum, golgi, plastid	6.1	42.45

Protein Annotations

MapMan:18.1.1.5.7	Gene3D:3.40.50.12610	GO:GO:0003674	GO:GO:0003824	GO:GO:0004576	GO:GO:0005575
GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0019538	InterPro:Oligo_trans_STT3	PFAM:PF02516
PANTHER:PTHR13872	PANTHER:PTHR13872:SF37	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1D01G342400	EnsemblPlants:TraesCS1D01G342400.1	SEG:seg

Description

No Description!

Coordinates

chr1D:-:432017016..432022545

Molecular Weight (calculated)

81870.8 Da

IEP (calculated)

9.367

GRAVY (calculated)

0.290

Length

738 amino acids

Sequence
(BLAST)

001: MQLCYVSVLN YPLLVQFLSK NGIYEFWNWF DDRTWYPLGR VIGGTVYPGL TLTAGSIWWF VNALNIPLSV ETVCVFTAPI FSAIASWATY LLTKEAKGTG
101: AGLMAAAILA MVPSYISRSV AGSYDNEAVA IFALVFTFYL YVKTLNTGSL FYATLNALSY FYMVCSWGGY TFIINLIPMH VLLCIVTGRY SSRLYIAYAP
201: LVILGTLLAA LVPVVGFNAV LTSEHFASFL VFIILHVVAF VYYIKGLLTP RLFKMAMTLV ITVGLAVCFA VVAILVALVA SSPTKGWSGR SLSLLDPTYA
301: SKYIPIIASV SEHQPPTWPS YFMDINVLAF LVPAGIISCF LPLSDASSFM VLYLVTAVYF SGVMVRLMLV LAPAACILSG IALSSAFDVL TRSMKCQLSK
401: LFDDGPAISG NGSPNGSSAS TVNTSSSKNE KTEKSEAAPK EKQSKKNRRK DKEVTESVSV KPKKEKRLSV LPLEASIVST LLLIALGGFY VVHCVWAAAE
501: AYSAPSIVLT SRSREGLHVF DDFREAYAWL SHNTDVDDKV ASWWDYGYQT TAMANRTVIV DNNTWNNTHI ATVGTAMSSP EKAAWEIFDS LDVKYVLVVF
601: GGLVGYPSDD INKFLWMVRI GGGEFPHIKE PDYLRDGQYR VDAQATPTML NCLMYKLCYY RFVETDGKGF DRVRGYEIGK KHFKLTHFEE VFTTHHWMVR
701: IYKLKPQKNR IRGKLKKLKS SSKTSSTLAA GRKKNPWQ

Best Arabidopsis Sequence Match ( AT1G34130.1 )
(BLAST)

001: MGGKSEPAKS ESMATKPDLL NTSFFSFKSL KLKTKQQELL LRISILGLVY ILAFIARLFS VLRYESMIHE FDPYFNYRTT LFLTEKGFYE FWNWFDSESW
101: YPLGRIIGGT LYPGLMVTAA LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AVLIAICPGY ISRSVAGSYD NEAVAIFALL
201: LTFYLFVKAV NTGSLAWALA SAFGYFYMVS AWGGYVFIIN LVPLYVLVLL ITGRYSMRLY IAYNCMYILG MLLAMQIRFV GFQHVQSGEH MGAMGVFLLM
301: QVFYFLDWVK YQLNDTKLFQ TFLRITVTSA ILVGGVAVGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY
401: FCFKRLTDAT IFIVMYGLTS LYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLTSLLRTK QKVSQTGSTK GAGSSKASSK VTLDQSQPFQ KNGAIALLVG
501: VFYLLSRYAI HCTWVTAEAY SSPSIVLAAR GAHGNRIIFD DYREAYYWLR QNTATDAKIM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE
601: DDAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEFRV DKGASPKMLN CLMYKLCYYR FGELTTEYGK PPGYDRARGV
701: EIGNKDIKLE HLEEAYTTSN WIVRIYRVKP PTNRL

Arabidopsis Description

STT3BGlycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PVA0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.