Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 3
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH74276 | Soybean | nucleus | 93.96 | 93.96 |
| VIT_11s0016g03320.t01 | Wine grape | plasma membrane | 87.66 | 87.66 |
| Solyc12g008360.1.1 | Tomato | nucleus | 83.16 | 83.81 |
| EES19829 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 80.46 | 80.05 |
| TraesCS1D01G342400.1 | Wheat | unclear | 74.81 | 78.86 |
| TraesCS1B01G352700.1 | Wheat | golgi | 79.56 | 78.55 |
| TraesCS1A01G340400.1 | Wheat | golgi | 79.43 | 78.53 |
| KXG33358 | Sorghum | plasma membrane | 77.64 | 78.44 |
| Zm00001d043441_P002 | Maize | plasma membrane | 77.51 | 78.31 |
| Os05t0519900-02 | Rice | endoplasmic reticulum, golgi | 80.46 | 77.38 |
| TraesCS3A01G274600.1 | Wheat | plasma membrane | 77.51 | 76.43 |
| TraesCS3D01G273900.1 | Wheat | plasma membrane | 77.38 | 75.16 |
| Zm00001d038804_P002 | Maize | plasma membrane | 80.59 | 74.64 |
| TraesCS3B01G308200.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 60.15 | 71.67 |
| HORVU3Hr1G071140.34 | Barley | golgi, mitochondrion, plasma membrane, plastid | 76.99 | 70.31 |
| GSMUA_AchrUn_... | Banana | cytosol | 6.68 | 69.33 |
| KRH38891 | Soybean | endoplasmic reticulum | 48.71 | 51.99 |
| KRH09394 | Soybean | endoplasmic reticulum, mitochondrion | 48.71 | 51.71 |
| KRH25466 | Soybean | cytosol | 2.06 | 47.06 |
Protein Annotations
| EntrezGene:100782502 | MapMan:18.1.1.5.7 | Gene3D:3.40.50.12610 | EMBL:ACUP02009948 | EnsemblPlantsGene:GLYMA_16G077300 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004576 | GO:GO:0004579 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006486 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008250 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0018279 | GO:GO:0019538 | GO:GO:0043687 | UniProt:I1MM02 | EnsemblPlants:KRH07262 |
| ProteinID:KRH07262 | ProteinID:KRH07262.1 | InterPro:Oligo_trans_STT3 | PFAM:PF02516 | PANTHER:PTHR13872 | PANTHER:PTHR13872:SF37 |
| TMHMM:TMhelix | UniParc:UPI000233AEE6 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr16:-:7923562..7932176
Molecular Weight (calculated)
86505.7 Da
IEP (calculated)
9.599
GRAVY (calculated)
0.348
Length
778 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASEALNGT TTTSIRHAFG NVLAFFILLM IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLTKNGI YDFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTLWRILNS INIPLSVETV CVFTAPIFSA FASWATYLLT KEVKGVGAGL TAAVLLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNSIAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSSR LYIAYAPLVV LGTLLAALVP VVGFNAVMTS EHFASFLVFI IIHVVALVHY IKGILSPKMF
301: KVAVALVVSV GLAVCCAMVA VLIALVASSP TKGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVILY
401: IVTSVYFSGV MVRLMLVLAP AACILSGIAL SQAFDVFTRS IKLQLPSLSG HSHVDAGETS SESVVPNDLA KTDKSEDTSK DRTSKKSKKK EKEHVEKPPS
501: KSLIKKRLLV LPLETSIIAI ILLVLLGAFY VVHSVWAAAE AYSAPSIVLT SHSHDGIHVF DDFREAYAWL SHNTEIDDKV ASWWDYGYQT TAMANRTVIV
601: DNNTWNNTHI ATVGTAMSSP EKAAWEIFHS LDVKYVLVVF GGLVGYPSDD INKFLWMVRI GGGVFPHIKE PDYLRDGQYR IDSMATPTML NSLMYKLSYY
701: RFVETDGKAF DRVRQTEIGK KHFKLTHFEE VFTTHHWMVR IYKLKPPKNR IRGKIKKSKF KASSKSASKR KGLKRNPF
101: AGTLWRILNS INIPLSVETV CVFTAPIFSA FASWATYLLT KEVKGVGAGL TAAVLLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNSIAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSSR LYIAYAPLVV LGTLLAALVP VVGFNAVMTS EHFASFLVFI IIHVVALVHY IKGILSPKMF
301: KVAVALVVSV GLAVCCAMVA VLIALVASSP TKGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVILY
401: IVTSVYFSGV MVRLMLVLAP AACILSGIAL SQAFDVFTRS IKLQLPSLSG HSHVDAGETS SESVVPNDLA KTDKSEDTSK DRTSKKSKKK EKEHVEKPPS
501: KSLIKKRLLV LPLETSIIAI ILLVLLGAFY VVHSVWAAAE AYSAPSIVLT SHSHDGIHVF DDFREAYAWL SHNTEIDDKV ASWWDYGYQT TAMANRTVIV
601: DNNTWNNTHI ATVGTAMSSP EKAAWEIFHS LDVKYVLVVF GGLVGYPSDD INKFLWMVRI GGGVFPHIKE PDYLRDGQYR IDSMATPTML NSLMYKLSYY
701: RFVETDGKAF DRVRQTEIGK KHFKLTHFEE VFTTHHWMVR IYKLKPPKNR IRGKIKKSKF KASSKSASKR KGLKRNPF
001: MAALESPLPG TPTAMRNAFG NVLSVLILVL IGVLAFSIRL FSVIKYESVI HEFDPYFNYR VTQFLSKNGI YEFWNWFDDR TWYPLGRVIG GTVYPGLTLT
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV
101: AGTIWWGLNS LNIPLSVETV CVFTAPVFSA FASWATYLLT KEVKGSGAGL AAAALLAMVP SYISRSVAGS YDNEAVAIFA LIFTFYLYIK TLNTGSLFYA
201: TLNALAYFYM VCSWGGYTFI INLIPMHVLL CIVTGRYSPR LYIAYAPLVV LGTLLAALVP VVGFNAVLTS EHFASFLVFI IIHVVALVYY IKGILSPKMF
301: KVAVTLVVSI GMVVCFIVVA ILVALVASSP TGGWSGRSLS LLDPTYASKY IPIIASVSEH QPPTWPSYFM DINVLAFLVP AGIIACFSPL SDASSFVVLY
401: IVMSVYFSGV MVRLMLVLAP AACIMSGIAL SQAFDVFTGS IKYQLGASSN STDDAEDNTS TNNAPKDDVS AGKTDKGEEI VKERSSKKGK KKEREPADKP
501: SVKAKIKKKA LVLPLEASIV ALLLLIMLGA FYVIHCVWAA AEAYSAPSIV LTSQSRDGLH VFDDFRESYA WLSHNTDVDD KVASWWDYGY QTTAMANRTV
601: IVDNNTWNNT HIATVGTAMS SPEKAAWEIF NSLDVKYVLV VFGGLIGYPS DDINKFLWMV RIGGGVFPHI KEADYLRDGQ YRIDSEATPT MLNSLMYKLS
701: YYRFVETDGK GYDRVRRTEI GKKHFKLTHF EEVFTSHHWM VRLYKLKPPR NRIRGKAKKL KSKTSSGLSS KSAKKNPWV
Arabidopsis Description
STT3ASTT3A [Source:UniProtKB/TrEMBL;Acc:A0A178URP5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.