CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

plastid 4
golgi 2
mitochondrion 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38891	Soybean	endoplasmic reticulum	96.32	96.84
Solyc03g098600.2.1	Tomato	nucleus, plastid, unclear	87.45	88.41
PGSC0003DMT400026302	Potato	endoplasmic reticulum, golgi, plasma membrane	86.9	87.86
GSMUA_Achr3P00140_001	Banana	endoplasmic reticulum, golgi	70.94	87.25
VIT_17s0053g00140.t01	Wine grape	plasma membrane	87.99	87.04
Bra028034.1-P	Field mustard	golgi, plasma membrane, plastid, vacuole	85.54	86.48
EES13093	Sorghum	endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid	84.86	86.39
Zm00001d026607_P002	Maize	plasma membrane	84.86	86.39
CDY15314	Canola	plasma membrane	85.4	86.34
CDX93729	Canola	peroxisome, plasma membrane, plastid, vacuole	85.4	86.34
Zm00001d001846_P001	Maize	plasma membrane	84.45	86.09
Os04t0675500-01	Rice	plasma membrane	84.04	85.44
TraesCS2D01G558800.1	Wheat	plasma membrane	83.49	84.65
TraesCS2B01G587900.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	83.22	84.37
AT1G34130.1	Thale cress	plasma membrane	84.58	84.35
TraesCS2A01G555600.1	Wheat	golgi	82.95	84.21
CDY28395	Canola	endoplasmic reticulum, peroxisome, plasma membrane	51.3	77.37
HORVU2Hr1G119980.1	Barley	cytosol	67.12	74.32
Bra034441.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	48.16	68.81
KRH25466	Soybean	cytosol	3.0	64.71
KRH74276	Soybean	nucleus	51.98	48.97
KRH07262	Soybean	endoplasmic reticulum	51.71	48.71

Protein Annotations

EntrezGene:100816018	MapMan:18.1.1.5.7	Gene3D:3.40.50.12610	EMBL:ACUP02010276	EnsemblPlantsGene:GLYMA_16G213300	GO:GO:0003674
GO:GO:0003824	GO:GO:0004576	GO:GO:0004579	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150
GO:GO:0008152	GO:GO:0008250	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0018279	GO:GO:0019538	GO:GO:0043687	UniProt:K7MIW7	EnsemblPlants:KRH09394
ProteinID:KRH09394	ProteinID:KRH09394.1	InterPro:Oligo_trans_STT3	PFAM:PF02516	PANTHER:PTHR13872	PANTHER:PTHR13872:SF38
TMHMM:TMhelix	UniParc:UPI000233B352	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:37138811..37144846

Molecular Weight (calculated)

82368.4 Da

IEP (calculated)

9.371

GRAVY (calculated)

0.341

Length

733 amino acids

Sequence
(BLAST)

001: MVVTTTKSSP MAQDLKTSMS SFTLPKTLKL KTKQQELLIR VATLSLIYVL AFITRLFSVL RYESMIHEFD PYFNYRTTLF LTRNGFAEFW NWFDSESWYP
101: LGRIIGGTLY PGLMLTAAAI HSLLRFLRLF VHIREVCVLT APFFASNTTL VAYFFAKEVW DSGAGIVAAA LIAICPGYIS RSVAGSYDNE GVAIFALLLT
201: FYLFVKAVNT GSLAWALGSA FGYFYMVSAW GGYVFIINLV PLYVLVLLVT GRYSLRLYVA YNCMYVLGML LAMQIRFVGF QHVQSGEHMA AMGVFFLLQV
301: FFFLDWVRHL LSDTKLFQAF LRITVTSAVA VGAVALGVGT ASGYISPWTG RFYSLLDPTY AKDHIPIIAS VSEHQPTAWS SFMFDFHILL FLFPAGLYFC
401: FKRLSDATIF LVMYGLTSMY FAGVMVRLIL VATPAVCLIS AIAVSATVKN LARVVRAKSP AVQSGSTKGT NSAKSSSKGV VDNSQPFQKN GAIVLLLGAF
501: YLLSRYVIHC TWVTSEAYSS PSIVLAARGA HGNRVIFDDY REAYFWLRQN TPPDAKVMSW WDYGYQITAM GNRTVIVDNN TWNNTHIATV GRAMSSYEDE
601: AYEIMRSLDV DYVLVVFGGV TGYSSDDINK FLWMVRIGGG VFPVIKEPDY LVNGEYRVDK GAAPKMLNCL MYKLSYYRFG ELTTEYGKPP GYDRARGVEI
701: GNKDIKLEYL EEAFTTQNWI VRIYKVKPPK NRW

Best Arabidopsis Sequence Match ( AT1G34130.1 )
(BLAST)

001: MGGKSEPAKS ESMATKPDLL NTSFFSFKSL KLKTKQQELL LRISILGLVY ILAFIARLFS VLRYESMIHE FDPYFNYRTT LFLTEKGFYE FWNWFDSESW
101: YPLGRIIGGT LYPGLMVTAA LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AVLIAICPGY ISRSVAGSYD NEAVAIFALL
201: LTFYLFVKAV NTGSLAWALA SAFGYFYMVS AWGGYVFIIN LVPLYVLVLL ITGRYSMRLY IAYNCMYILG MLLAMQIRFV GFQHVQSGEH MGAMGVFLLM
301: QVFYFLDWVK YQLNDTKLFQ TFLRITVTSA ILVGGVAVGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY
401: FCFKRLTDAT IFIVMYGLTS LYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLTSLLRTK QKVSQTGSTK GAGSSKASSK VTLDQSQPFQ KNGAIALLVG
501: VFYLLSRYAI HCTWVTAEAY SSPSIVLAAR GAHGNRIIFD DYREAYYWLR QNTATDAKIM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE
601: DDAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEFRV DKGASPKMLN CLMYKLCYYR FGELTTEYGK PPGYDRARGV
701: EIGNKDIKLE HLEEAYTTSN WIVRIYRVKP PTNRL

Arabidopsis Description

STT3BGlycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PVA0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.