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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 5
  • golgi 4
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:secretory
EpiLoc:golgi
iPSORT:plastid
MultiLoc:golgi
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
plasma membrane: 18260611
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES13093 Sorghum endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid 96.26 96.39
Zm00001d026607_P002 Maize plasma membrane 95.84 95.97
Zm00001d001846_P001 Maize plasma membrane 95.42 95.69
TraesCS2D01G558800.1 Wheat plasma membrane 95.42 95.16
TraesCS2A01G555600.1 Wheat golgi 95.01 94.88
TraesCS2B01G587900.1 Wheat endoplasmic reticulum, golgi, plasma membrane 94.73 94.47
GSMUA_Achr3P00140_001 Banana endoplasmic reticulum, golgi 73.79 89.26
Solyc03g098600.2.1 Tomato nucleus, plastid, unclear 85.71 85.24
PGSC0003DMT400026302 Potato endoplasmic reticulum, golgi, plasma membrane 85.58 85.1
KRH38891 Soybean endoplasmic reticulum 85.58 84.64
KRH09394 Soybean endoplasmic reticulum, mitochondrion 85.44 84.04
CDY15314 Canola plasma membrane 84.33 83.86
CDX93729 Canola peroxisome, plasma membrane, plastid, vacuole 84.33 83.86
Bra028034.1-P Field mustard golgi, plasma membrane, plastid, vacuole 84.05 83.59
VIT_17s0053g00140.t01 Wine grape plasma membrane 85.02 82.73
AT1G34130.1 Thale cress plasma membrane 83.91 82.31
HORVU2Hr1G119980.1 Barley cytosol 74.2 80.82
CDY28395 Canola endoplasmic reticulum, peroxisome, plasma membrane 50.62 75.1
Bra034441.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 47.57 66.86
Os05t0519900-02 Rice endoplasmic reticulum, golgi 53.95 48.08
Protein Annotations
MapMan:18.1.1.5.7Gene3D:3.40.50.12610EntrezGene:4337389EMBL:AK099138ProteinID:BAF16162.1ProteinID:BAS91617.1
ProteinID:CAE03245.2ProteinID:EAZ32398.1GO:GO:0003674GO:GO:0003824GO:GO:0004576GO:GO:0004579
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0005886GO:GO:0005975GO:GO:0006464GO:GO:0006486GO:GO:0008150GO:GO:0008152
GO:GO:0008250GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016740
GO:GO:0016757GO:GO:0018279GO:GO:0019538GO:GO:0043687InterPro:Oligo_trans_STT3EnsemblPlantsGene:Os04g0675500
EnsemblPlants:Os04t0675500-01PFAM:PF02516PANTHER:PTHR13872PANTHER:PTHR13872:SF38UniProt:Q7XQ88TMHMM:TMhelix
UniParc:UPI00001B14DBRefSeq:XP_015635991.1SEG:seg:::
Description
oligosaccharyltransferase subunit Stt3aSimilar to Itm1 protein. (Os04t0675500-01);Non-protein coding transcript. (Os04t0675500-02);Similar to Itm1 protein. (Os04t0675500-03)
Coordinates
chr4:-:34492078..34496501
Molecular Weight (calculated)
80736.3 Da
IEP (calculated)
9.044
GRAVY (calculated)
0.372
Length
721 amino acids
Sequence
(BLAST)
001: MAAATALDSL PAPLRSLRLK TKQQELLLRV SALALIYVLA FVVRLFSVLR YESMIHEFDP YFNYRTTLFL SDHGFSEFWN WFDFESWYPL GRVVGGTLFP
101: GLMVTAALLH RLLRALSLAV HIREVCVLTA PFFAANTTLV AYAFGREIWD SGAGLVAAAL IAVCPGYISR SVAGSYDNEG VAIFALLLTF YLFVRAVNTG
201: SLAWSLASAF GYFYMVSAWG GYVFIINLLP LYVLVLLVTG RYSQRLYVAY NSTYVLGMLL AMQIRFVGFQ HVQSGEHMAA MGVFFLLQVF FFLDWVKYLL
301: NDAKLFKSFL RITLTCVITV GTLALGIGTA SGYISPWTGR FYSLLDPTYA KDHIPIIASV SEHQPTAWSS FMFDFHILLF LFPAGLYFCF KRLSDATIFI
401: VMYGLTSMYF AGVMVRLILV AAPAVCLISA IAASATIKNL TTLIRTKSKS PQTVSGKSSG SKAAAKGAVD QSLPFQQNVA IALLLGAFYL LSRYAVHCTW
501: VTSEAYSSPS IVLAARGHNG GRVIFDDYRE AYYWLRQNTP SDAKIMSWWD YGYQITAMGN RTVIVDNNTW NNTHIATVGR AMSSYEDEAY EIMQSLDVNY
601: VLVVFGGVTG YSSDDINKFL WMVRIGGGVF PVIKEPDYLV NGEYRVDKGA APKMLNCLMY KLCYYRFGEL TTEYGKPPGY DRVRGVEIGN KDIKLEYLEE
701: AFTTSNWIVR IYKVKPPKNR S
Best Arabidopsis Sequence Match ( AT1G34130.1 )
(BLAST)
001: MGGKSEPAKS ESMATKPDLL NTSFFSFKSL KLKTKQQELL LRISILGLVY ILAFIARLFS VLRYESMIHE FDPYFNYRTT LFLTEKGFYE FWNWFDSESW
101: YPLGRIIGGT LYPGLMVTAA LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AVLIAICPGY ISRSVAGSYD NEAVAIFALL
201: LTFYLFVKAV NTGSLAWALA SAFGYFYMVS AWGGYVFIIN LVPLYVLVLL ITGRYSMRLY IAYNCMYILG MLLAMQIRFV GFQHVQSGEH MGAMGVFLLM
301: QVFYFLDWVK YQLNDTKLFQ TFLRITVTSA ILVGGVAVGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY
401: FCFKRLTDAT IFIVMYGLTS LYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLTSLLRTK QKVSQTGSTK GAGSSKASSK VTLDQSQPFQ KNGAIALLVG
501: VFYLLSRYAI HCTWVTAEAY SSPSIVLAAR GAHGNRIIFD DYREAYYWLR QNTATDAKIM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE
601: DDAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEFRV DKGASPKMLN CLMYKLCYYR FGELTTEYGK PPGYDRARGV
701: EIGNKDIKLE HLEEAYTTSN WIVRIYRVKP PTNRL
Arabidopsis Description
STT3BGlycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PVA0]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.