Factsheet for TraesCS2A01G555600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
golgi 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	endoplasmic reticulum, golgi, mitochondrion, plasma membrane
iPSORT:	plastid
MultiLoc:	golgi
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G587900.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	99.31	99.17
TraesCS2D01G558800.1	Wheat	plasma membrane	98.75	98.62
Os04t0675500-01	Rice	plasma membrane	94.88	95.01
EES13093	Sorghum	endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid	94.04	94.31
Zm00001d001846_P001	Maize	plasma membrane	93.77	94.16
Zm00001d026607_P002	Maize	plasma membrane	93.49	93.75
GSMUA_Achr3P00140_001	Banana	endoplasmic reticulum, golgi	72.85	88.25
HORVU2Hr1G119980.1	Barley	cytosol	77.29	84.29
Solyc03g098600.2.1	Tomato	nucleus, plastid, unclear	84.63	84.28
PGSC0003DMT400026302	Potato	endoplasmic reticulum, golgi, plasma membrane	84.35	84.0
KRH38891	Soybean	endoplasmic reticulum	84.49	83.68
CDY15314	Canola	plasma membrane	83.66	83.31
CDX93729	Canola	peroxisome, plasma membrane, plastid, vacuole	83.52	83.17
KRH09394	Soybean	endoplasmic reticulum, mitochondrion	84.21	82.95
Bra028034.1-P	Field mustard	golgi, plasma membrane, plastid, vacuole	83.1	82.76
AT1G34130.1	Thale cress	plasma membrane	82.83	81.36
VIT_17s0053g00140.t01	Wine grape	plasma membrane	83.38	81.24
CDY28395	Canola	endoplasmic reticulum, peroxisome, plasma membrane	50.0	74.28
Bra034441.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	46.95	66.08
TraesCS1A01G340400.1	Wheat	golgi	52.63	48.28
TraesCS3A01G274600.1	Wheat	plasma membrane	52.22	47.78

Protein Annotations

MapMan:18.1.1.5.7	Gene3D:3.40.50.12610	GO:GO:0003674	GO:GO:0003824	GO:GO:0004576	GO:GO:0005575
GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0019538	InterPro:Oligo_trans_STT3	PFAM:PF02516
PANTHER:PTHR13872	PANTHER:PTHR13872:SF38	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2A01G555600	EnsemblPlants:TraesCS2A01G555600.1	SEG:seg

Description

No Description!

Coordinates

chr2A:-:759964330..759969705

Molecular Weight (calculated)

81010.9 Da

IEP (calculated)

8.970

GRAVY (calculated)

0.360

Length

722 amino acids

Sequence
(BLAST)

001: MAAAATMLDS LPAPLLRALR LKTKQQELLL RVSALALIYV LAFAVRLFSV LRYESMIHEF DPYFNYRTTL YLTEHGYSEF WNWFDHESWY PLGRVVGGTL
101: FPGLMVTAAL LHRLLRALSL AVHIREVCVL TAPFFAANTT LVAYAFGREI WDSGAGLVAA ALIAVCPGYI SRSVAGSYDN EGVAIFALLL TFYLFVRAVN
201: TGSLAWSLAA AFGYFYMVSA WGGYVFIINL LPLYVLVLLV TGRYSQRLYV AYNCTYVLGM LLGMQIRFVG FQHVQSGEHM AAMGVFFLLQ VFFFLDWVKY
301: MLNDVKLFKS FLRITLTCVI SVGTLALGIG TASGYISPWT GRFYSLLDPT YAKDHIPIIA SVSEHQPTAW SSFMFDFHIL LFLFPAGLYF CFKRLSDATI
401: FIVMYGLTSM YFAGVMVRLI LVAAPAVCLI SAIAVSATIK NLTTLIRSKA KSPQTTGKTT GSKAAAKGAV DQPLPFQHNV AVALLLGAFY LLSRYAIHCT
501: WVTSEAYSSP SIVLSARGHN GGRVIFDDYR EAYYWLRQNT PTDAKIMSWW DYGYQITAMG NRTVIVDNNT WNNTHIATVG RAMSSYEDEA YEIMQSLDVN
601: YVLVVFGGVT GYSSDDINKF LWMVRIGGGV FPVIKEPDYL VNGEYRVDKG ASPKMLNCLM YKLCYYRFGE LTTEYGKPPG YDRVRGVEIG NKDIKLEYLE
701: EAFTTSNWIV RIYKVKPPKN RS

Best Arabidopsis Sequence Match ( AT1G34130.1 )
(BLAST)

001: MGGKSEPAKS ESMATKPDLL NTSFFSFKSL KLKTKQQELL LRISILGLVY ILAFIARLFS VLRYESMIHE FDPYFNYRTT LFLTEKGFYE FWNWFDSESW
101: YPLGRIIGGT LYPGLMVTAA LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AVLIAICPGY ISRSVAGSYD NEAVAIFALL
201: LTFYLFVKAV NTGSLAWALA SAFGYFYMVS AWGGYVFIIN LVPLYVLVLL ITGRYSMRLY IAYNCMYILG MLLAMQIRFV GFQHVQSGEH MGAMGVFLLM
301: QVFYFLDWVK YQLNDTKLFQ TFLRITVTSA ILVGGVAVGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY
401: FCFKRLTDAT IFIVMYGLTS LYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLTSLLRTK QKVSQTGSTK GAGSSKASSK VTLDQSQPFQ KNGAIALLVG
501: VFYLLSRYAI HCTWVTAEAY SSPSIVLAAR GAHGNRIIFD DYREAYYWLR QNTATDAKIM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE
601: DDAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEFRV DKGASPKMLN CLMYKLCYYR FGELTTEYGK PPGYDRARGV
701: EIGNKDIKLE HLEEAYTTSN WIVRIYRVKP PTNRL

Arabidopsis Description

STT3BGlycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PVA0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.