Factsheet for Solyc03g098600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus

Predictor Summary:

plastid 1
golgi 3
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid, unclear
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	golgi
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026302	Potato	endoplasmic reticulum, golgi, plasma membrane	97.24	97.24
GSMUA_Achr3P00140_001	Banana	endoplasmic reticulum, golgi	74.21	90.27
VIT_17s0053g00140.t01	Wine grape	plasma membrane	91.17	89.2
Bra028034.1-P	Field mustard	golgi, plasma membrane, plastid, vacuole	88.69	88.69
CDY15314	Canola	plasma membrane	88.69	88.69
CDX93729	Canola	peroxisome, plasma membrane, plastid, vacuole	88.41	88.41
KRH38891	Soybean	endoplasmic reticulum	88.41	87.93
KRH09394	Soybean	endoplasmic reticulum, mitochondrion	88.41	87.45
AT1G34130.1	Thale cress	plasma membrane	88.28	87.07
EES13093	Sorghum	endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid	85.52	86.11
Os04t0675500-01	Rice	plasma membrane	85.24	85.71
Zm00001d026607_P002	Maize	plasma membrane	84.83	85.42
Zm00001d001846_P001	Maize	plasma membrane	84.69	85.4
TraesCS2D01G558800.1	Wheat	plasma membrane	84.69	84.92
TraesCS2B01G587900.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	84.41	84.65
TraesCS2A01G555600.1	Wheat	golgi	84.28	84.63
CDY28395	Canola	endoplasmic reticulum, peroxisome, plasma membrane	52.28	77.98
HORVU2Hr1G119980.1	Barley	cytosol	68.28	74.77
Bra034441.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	49.24	69.59
Solyc12g008360.1.1	Tomato	nucleus	51.59	48.45

Protein Annotations

MapMan:18.1.1.5.7	Gene3D:3.40.50.12610	GO:GO:0003674	GO:GO:0003824	GO:GO:0004576	GO:GO:0004579
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005975
GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0008250	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0018279	GO:GO:0019538
GO:GO:0043687	UniProt:K4BJS3	InterPro:Oligo_trans_STT3	PFAM:PF02516	PANTHER:PTHR13872	PANTHER:PTHR13872:SF38
EnsemblPlantsGene:Solyc03g098600.2	EnsemblPlants:Solyc03g098600.2.1	TMHMM:TMhelix	UniParc:UPI0002768954	SEG:seg	:

Description

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Source:Projected from Arabidopsis thaliana (AT1G34130) UniProtKB/Swiss-Prot;Acc:Q9FX21]

Coordinates

chr3:-:60901077..60907212

Molecular Weight (calculated)

81940.1 Da

IEP (calculated)

9.155

GRAVY (calculated)

0.330

Length

725 amino acids

Sequence
(BLAST)

001: MEKATDLLSS SQSFFSLKSL KLKTKQQELL LRISILGLVY ILAFITRLFS VLRYESMIHE FDPYFNYRTT LYLTQKGFYE FWNWFDSESW YPLGRIIGGT
101: LYPGLMVTAA FIYWILRFLR FAVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AALIAICPGY ISRSVAGSYD NEGVAIFALL LTFYLFVKAV
201: KTGSLAWSLG SALGYFYMVS AWGGYVFIIN LIPLYVLVLL VVGRYSMRLY VAYNCMYILG MLLAMQIRFV GFQHVQSGEH MAAMGVFFLM QVFYFLDWVK
301: HLLNDQKLFQ AFLRITLTCA ISVGVIALGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDFHI LLILFPAGLY FCFKRLSDAT
401: IFIVMYGLTS MYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLSLLVRAK TKPTQAGSGK GTTSTKASSK GALDQSLPYQ KNGAIALLVG AFYLLTRYAI
501: HCTWVTSEAY SSPSIVLAAR GAHGNRVIFD DYREAYFWLR QNTPQDAKVM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE DEAYEIMRSL
601: DVDYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEYRV DKGAAPKMLN CLMYKLSYYR FGELTTEYGQ PPGYDRARGV EIGNKDIKLE
701: YLEEAFTTSN WIVRIYKVKP PKNRW

Best Arabidopsis Sequence Match ( AT1G34130.1 )
(BLAST)

001: MGGKSEPAKS ESMATKPDLL NTSFFSFKSL KLKTKQQELL LRISILGLVY ILAFIARLFS VLRYESMIHE FDPYFNYRTT LFLTEKGFYE FWNWFDSESW
101: YPLGRIIGGT LYPGLMVTAA LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AVLIAICPGY ISRSVAGSYD NEAVAIFALL
201: LTFYLFVKAV NTGSLAWALA SAFGYFYMVS AWGGYVFIIN LVPLYVLVLL ITGRYSMRLY IAYNCMYILG MLLAMQIRFV GFQHVQSGEH MGAMGVFLLM
301: QVFYFLDWVK YQLNDTKLFQ TFLRITVTSA ILVGGVAVGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY
401: FCFKRLTDAT IFIVMYGLTS LYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLTSLLRTK QKVSQTGSTK GAGSSKASSK VTLDQSQPFQ KNGAIALLVG
501: VFYLLSRYAI HCTWVTAEAY SSPSIVLAAR GAHGNRIIFD DYREAYYWLR QNTATDAKIM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE
601: DDAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEFRV DKGASPKMLN CLMYKLCYYR FGELTTEYGK PPGYDRARGV
701: EIGNKDIKLE HLEEAYTTSN WIVRIYRVKP PTNRL

Arabidopsis Description

STT3BGlycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PVA0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.