CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
golgi 2
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09394	Soybean	endoplasmic reticulum, mitochondrion	96.84	96.32
Solyc03g098600.2.1	Tomato	nucleus, plastid, unclear	87.93	88.41
PGSC0003DMT400026302	Potato	endoplasmic reticulum, golgi, plasma membrane	87.52	88.0
GSMUA_Achr3P00140_001	Banana	endoplasmic reticulum, golgi	71.74	87.75
VIT_17s0053g00140.t01	Wine grape	plasma membrane	88.48	87.04
CDX93729	Canola	peroxisome, plasma membrane, plastid, vacuole	86.56	87.03
Bra028034.1-P	Field mustard	golgi, plasma membrane, plastid, vacuole	86.42	86.9
Zm00001d026607_P002	Maize	plasma membrane	85.73	86.81
CDY15314	Canola	plasma membrane	86.28	86.76
EES13093	Sorghum	endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid	85.6	86.67
Zm00001d001846_P001	Maize	plasma membrane	85.19	86.37
Os04t0675500-01	Rice	plasma membrane	84.64	85.58
AT1G34130.1	Thale cress	plasma membrane	85.87	85.17
TraesCS2D01G558800.1	Wheat	plasma membrane	83.81	84.51
TraesCS2A01G555600.1	Wheat	golgi	83.68	84.49
TraesCS2B01G587900.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	83.68	84.37
CDY28395	Canola	endoplasmic reticulum, peroxisome, plasma membrane	51.71	77.57
HORVU2Hr1G119980.1	Barley	cytosol	67.9	74.77
Bra034441.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	48.56	69.01
KRH25466	Soybean	cytosol	3.02	64.71
KRH74276	Soybean	nucleus	52.26	48.97
KRH07262	Soybean	endoplasmic reticulum	51.99	48.71

Protein Annotations

EntrezGene:100780916	MapMan:18.1.1.5.7	Gene3D:3.40.50.12610	EMBL:ACUP02005889	EnsemblPlantsGene:GLYMA_09G165000	GO:GO:0003674
GO:GO:0003824	GO:GO:0004576	GO:GO:0004579	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150
GO:GO:0008152	GO:GO:0008250	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0018279	GO:GO:0019538	GO:GO:0043687	UniProt:I1L3V7	EnsemblPlants:KRH38891
ProteinID:KRH38891	ProteinID:KRH38891.1	InterPro:Oligo_trans_STT3	PFAM:PF02516	PANTHER:PTHR13872	PANTHER:PTHR13872:SF38
TMHMM:TMhelix	UniParc:UPI0002338A54	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:38908693..38914861

Molecular Weight (calculated)

81968.0 Da

IEP (calculated)

9.371

GRAVY (calculated)

0.344

Length

729 amino acids

Sequence
(BLAST)

001: MVVTSKPSPM ALDLKTSFTL PKTLKLKTKQ QELLIRVATL SLIYVLAFIT RLFSVLRYES MIHEFDPYFN YRTTLFLTRN GFAEFWNWFD SESWYPLGRI
101: IGGTLYPGLM LTAAAIHSLL RFLRLFVHIR EVCVLTAPFF ASNTTLVAYF FAKEVWDSGA GIVAAALIAI CPGYISRSVA GSYDNEGVAI FALLLTFYLF
201: VKAVNTGSLA WALGSAFGYF YMVSAWGGYV FIINLVPLYV LVLLVTGRYS MRLYVAYNCM YVLGMLLAMQ IRFVGFQHVQ SGEHMAAMGV FFLLQVFFFL
301: DWVRHLLSDT KLFQAFLRIT VTSAVAVGAV ALGVGTASGY ISPWTGRFYS LLDPTYAKDH IPIIASVSEH QPTAWSSFMF DFHILLFLFP AGLYFCFKRL
401: SDATIFLVMY GLTSMYFAGV MVRLILVATP AVCLISAIAV SATVKNLTRV VRAKSQAVQS GSTKGTSSAK SSAKGVVDNS QPFQKNGAIV LLLGAFYLLS
501: RYAIHCTWVT SEAYSSPSIV LAARGAHGNR VIFDDYREAY FWLRQNTPQD AKVMSWWDYG YQITAMGNRT VIVDNNTWNN THIATVGRAM SSYEDEAYDI
601: MRSLDVDYVL VVFGGVTGYS SDDINKFLWM VRIGGGVFPV IKEPDYLVNG EYRVDKGAAP KMLNCLMYKL SYYRFGELTT EYGKPPGYDR ARGVEIGNKD
701: IKLEYLEEAF TTQNWIVRIY KVKPPKNRW

Best Arabidopsis Sequence Match ( AT1G34130.1 )
(BLAST)

001: MGGKSEPAKS ESMATKPDLL NTSFFSFKSL KLKTKQQELL LRISILGLVY ILAFIARLFS VLRYESMIHE FDPYFNYRTT LFLTEKGFYE FWNWFDSESW
101: YPLGRIIGGT LYPGLMVTAA LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AVLIAICPGY ISRSVAGSYD NEAVAIFALL
201: LTFYLFVKAV NTGSLAWALA SAFGYFYMVS AWGGYVFIIN LVPLYVLVLL ITGRYSMRLY IAYNCMYILG MLLAMQIRFV GFQHVQSGEH MGAMGVFLLM
301: QVFYFLDWVK YQLNDTKLFQ TFLRITVTSA ILVGGVAVGV GTASGYISPW TGRFYSLLDP TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY
401: FCFKRLTDAT IFIVMYGLTS LYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLTSLLRTK QKVSQTGSTK GAGSSKASSK VTLDQSQPFQ KNGAIALLVG
501: VFYLLSRYAI HCTWVTAEAY SSPSIVLAAR GAHGNRIIFD DYREAYYWLR QNTATDAKIM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE
601: DDAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEFRV DKGASPKMLN CLMYKLCYYR FGELTTEYGK PPGYDRARGV
701: EIGNKDIKLE HLEEAYTTSN WIVRIYRVKP PTNRL

Arabidopsis Description

STT3BGlycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PVA0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.