CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82457	Canola	cytosol	92.86	5.04
CDX97618	Canola	cytosol	92.86	5.03
CDX98516	Canola	cytosol	92.86	4.18
CDY45929	Canola	cytosol	76.19	3.82
CDY14847	Canola	cytosol	85.71	3.73
CDY51508	Canola	cytosol	85.71	3.73
CDY25721	Canola	cytosol	76.19	3.59
CDY02513	Canola	cytosol	76.19	3.32
CDY47982	Canola	cytosol	76.19	3.29
CDY55389	Canola	cytosol	76.19	3.28
CDY04256	Canola	cytosol	28.57	1.16
CDY07365	Canola	cytosol	28.57	1.16
CDX85005	Canola	cytosol	28.57	1.14
CDY16140	Canola	plastid	28.57	1.06
CDY32330	Canola	cytosol	0.0	0.0
CDY32329	Canola	cytosol	0.0	0.0
CDY28081	Canola	cytosol	0.0	0.0
CDX75798	Canola	cytosol	0.0	0.0
CDY53032	Canola	golgi, mitochondrion	0.0	0.0
CDX77888	Canola	endoplasmic reticulum, golgi	0.0	0.0

Protein Annotations

KEGG:00620+4.1.1.31	KEGG:00680+4.1.1.31	KEGG:00710+4.1.1.31	KEGG:00720+4.1.1.31	MapMan:35.1	GO:A0A078H686
UniProt:A0A078H686	EnsemblPlants:CDY32328	ProteinID:CDY32328	ProteinID:CDY32328.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0008964	GO:GO:0009987
GO:GO:0015977	EnsemblPlantsGene:GSBRNA2T00051835001	InterPro:PEP_COase	PFAM:PF00311	PANTHER:PTHR30523	PANTHER:PTHR30523:SF11
MetaCyc:PWY-1622	MetaCyc:PWY-241	MetaCyc:PWY-5913	MetaCyc:PWY-6142	MetaCyc:PWY-6146	MetaCyc:PWY-6549
MetaCyc:PWY-7115	MetaCyc:PWY-7117	MetaCyc:PWY-7124	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	UniParc:UPI0004EE5BCF

Description

BnaC01g36470DBnaC01g36470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H686]

Coordinates

chrLK032292:-:172006..172134

Molecular Weight (calculated)

4407.3 Da

IEP (calculated)

4.588

GRAVY (calculated)

-0.198

Length

42 amino acids

Sequence
(BLAST)

1: MQSSKSAQEL VTLNPKSEYA PGLEDTLILT MKGIAAGLQN TG

Best Arabidopsis Sequence Match ( AT3G14940.1 )
(BLAST)

001: MAGRNIEKMA SIDAQLRQLV PAKVSEDDKL VEYDALLLDR FLDILQDLHG EDLRETVQEL YELSAEYEGK REPSKLEELG SVLTSLDPGD SIVISKAFSH
101: MLNLANLAEE VQIAHRRRIK KLKKGDFVDE SSATTESDIE ETFKRLVSDL GKSPEEIFDA LKNQTVDLVL TAHPTQSVRR SLLQKHGRIR DCLAQLYAKD
201: ITPDDKQELD ESLQREIQAA FRTDEIRRTP PTPQDEMRAG MSYFHETIWK GVPKFLRRVD TALKNIGIDE RVPYNAPLIQ FSSWMGGDRD GNPRVTPEVT
301: RDVCLLARMM AANLYYNQIE NLMFELSMWR CTDEFRVRAD ELHRNSRKDA AKHYIEFWKT IPPTEPYRVI LGDVRDKLYH TRERSRQLLS NGISDIPEEA
401: TFTNVEQFLE PLELCYRSLC SCGDSPIADG SLLDFLRQVS TFGLSLVRLD IRQESERHTD VLDAITKHLD IGSSYRDWSE EGRQEWLLAE LSGKRPLFGP
501: DLPKTEEISD VLDTFKVISE LPSDCFGAYI ISMATSPSDV LAVELLQREC HVKNPLRVVP LFEKLADLEA APAAVARLFS IDWYKNRING KQEVMIGYSD
601: SGKDAGRLSA AWELYKAQEE LVKVAKKYGV KLTMFHGRGG TVGRGGGPTH LAILSQPPDT VNGSLRVTVQ GEVIEQSFGE AHLCFRTLQR FTAATLEHGM
701: NPPISPKPEW RALLDEMAVV ATEEYRSVVF QEPRFVEYFR LATPELEYGR MNIGSRPSKR KPSGGIESLR AIPWIFAWTQ TRFHLPVWLG FGAAFRYAIK
801: KDVRNLHMLQ DMYKQWPFFR VTIDLIEMVF AKGDPGIAAL YDKLLVSEDL WAFGEKLRAN FDETKNLVLQ TAGHKDLLEG DPYLKQRLRL RDSYITTLNV
901: CQAYTLKRIR DANYNVTLRP HISKEIMQSS KSAQELVKLN PTSEYAPGLE DTLILTMKGI AAGLQNTG

Arabidopsis Description

PPC3Phosphoenolpyruvate carboxylase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q84VW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.