CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU79403	Sorghum	endoplasmic reticulum, extracellular	39.88	57.95
OQU79405	Sorghum	cytosol	43.56	56.35
Os12t0273300-01	Rice	mitochondrion	52.15	55.5
EES17236	Sorghum	plastid, vacuole	51.64	55.01
EES16173	Sorghum	cytosol	38.34	41.53
EER95860	Sorghum	cytosol	38.96	40.88
OQU79329	Sorghum	plasma membrane	39.37	40.4
KXG28987	Sorghum	cytosol	38.04	40.17
OQU80417	Sorghum	plasma membrane	38.04	39.7
KXG25270	Sorghum	cytosol	36.61	38.13
OQU84038	Sorghum	cytosol	36.5	37.9
OQU83206	Sorghum	cytosol	35.89	36.72
OQU83209	Sorghum	cytosol	35.69	36.58
KXG24574	Sorghum	cytosol	36.71	35.62
OQU77418	Sorghum	cytosol	25.46	35.52
EER97636	Sorghum	cytosol	33.74	35.18
EES08659	Sorghum	cytosol	32.62	34.9
KXG36822	Sorghum	cytosol	30.88	33.56
EES02901	Sorghum	cytosol	26.79	32.23
KXG24573	Sorghum	endoplasmic reticulum, golgi, plasma membrane	24.85	32.02
KXG24334	Sorghum	cytosol	30.37	31.83
KXG21363	Sorghum	cytosol	34.56	28.74

Protein Annotations

Gene3D:1.10.8.430	Gene3D:3.40.50.300	Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:8067231	UniProt:C5YPB1
ncoils:Coil	EnsemblPlants:EES16086	ProteinID:EES16086	ProteinID:EES16086.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006950	GO:GO:0006952
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0043531
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:NB-ARC	InterPro:P-loop_NTPase	PFAM:PF00931	PRINTS:PR00364
PANTHER:PTHR43889	PANTHER:PTHR43889:SF46	InterPro:RX-like_CC	EnsemblPlantsGene:SORBI_3008G115700	SUPFAM:SSF52058	SUPFAM:SSF52540
UniParc:UPI0001A8841F	RefSeq:XP_002442248.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:52537290..52541176

Molecular Weight (calculated)

111139.0 Da

IEP (calculated)

7.283

GRAVY (calculated)

-0.199

Length

978 amino acids

Sequence
(BLAST)

001: MDAGALASAS TGVMNSLLAK LSAMVEAEYE LLGGTKSDIA FLRNELSSMN ALLQKLAAAE KLDVQVQVWR DNIRELSYDI EDCIDMFMLM QKKLNHGDSH
101: STDTSIKGKT GNFVKMIIGK VKKLWSGFQM ANQIHELKAR VVEESERRLR YKYDESISVA GKVEIDPRLP ALYVEAEKLV GIDGPMQNLM DWLMKDGSTQ
201: QQLRMVSIVG FGGLGKTTLA NQVYGKIKSR FDCTAFVPVS RSPIIKKILR DLLTELGSSK SHSSSDDDDE RQLINEVRAY LQDKRYLIVV DDIWSTVAWE
301: FMKSALPENK LCSRIITTTR HSDVARSCCS SYEGYIHNIQ PLSDQDSSML FYNRVFQRQS SCPPHLEEVS LSIIKRCHGL PLAINTVASL LANRSNDIDQ
401: WEQVRDSMVS GLHSQLVRDI LMLSYYDLPH HLKSCFLYLC IFPEDCKIAR EKLIWRWIAE GFITNEFGQT LDQTGENYFN DLINRSLIQP IDIMYNGMAR
501: ACRLHDTVLD LIISLSTEQN FVTVVEGEVF KCPANKIRRL SLLSSFLEND VLQEIMNKCS QVRSLIRFHV AHKEAPHLPI FHSLRVLVLR CTCANLGINN
601: HHIKSIGSSL QLKYLEIGCP SITELPENIG DLQYLQTLDI HGSKIDRLPP TIGNLKNLVR LLVDFNIELP DEIGNLQSLR MLSHAYSHGS VKFLEQLRRL
701: TNLRVLHIRL HGSNELGDHC KWKYQEALEL SLTVLGKHGL QSLEIDTNAY STSRVMDLLW CNATSLRKLC NQSYLSSNIP QGMQCLVNLA HLDIRVTRIK
801: HEDLCILGAI PTLLYAMLTS LEAPAERLTI GRQQFCCLKE FIFRSYGEGG LRMVAEQKAM PRLGSLRLHF RAKETESKTG FEFNFVHLAN LEHITATIDC
901: YMATRSRVEA AEATIRNTAS IHPGHPTLQI ERFREYSMVE GEDRREMVLE VEDSTTYDKG VQQKQSRKRK CCEGVLPY

Best Arabidopsis Sequence Match ( AT3G07040.1 )
(BLAST)

001: MASATVDFGI GRILSVLENE TLLLSGVHGE IDKMKKELLI MKSFLEDTHK HGGNGSTTTT TQLFQTFVAN TRDLAYQIED ILDEFGYHIH GYRSCAKIWR
101: AFHFPRYMWA RHSIAQKLGM VNVMIQSISD SMKRYYHSEN YQAALLPPID DGDAKWVNNI SESSLFFSEN SLVGIDAPKG KLIGRLLSPE PQRIVVAVVG
201: MGGSGKTTLS ANIFKSQSVR RHFESYAWVT ISKSYVIEDV FRTMIKEFYK EADTQIPAEL YSLGYRELVE KLVEYLQSKR YIVVLDDVWT TGLWREISIA
301: LPDGIYGSRV MMTTRDMNVA SFPYGIGSTK HEIELLKEDE AWVLFSNKAF PASLEQCRTQ NLEPIARKLV ERCQGLPLAI ASLGSMMSTK KFESEWKKVY
401: STLNWELNNN HELKIVRSIM FLSFNDLPYP LKRCFLYCSL FPVNYRMKRK RLIRMWMAQR FVEPIRGVKA EEVADSYLNE LVYRNMLQVI LWNPFGRPKA
501: FKMHDVIWEI ALSVSKLERF CDVYNDDSDG DDAAETMENY GSRHLCIQKE MTPDSIRATN LHSLLVCSSA KHKMELLPSL NLLRALDLED SSISKLPDCL
601: VTMFNLKYLN LSKTQVKELP KNFHKLVNLE TLNTKHSKIE ELPLGMWKLK KLRYLITFRR NEGHDSNWNY VLGTRVVPKI WQLKDLQVMD CFNAEDELIK
701: NLGCMTQLTR ISLVMVRREH GRDLCDSLNK IKRIRFLSLT SIDEEEPLEI DDLIATASIE KLFLAGKLER VPSWFNTLQN LTYLGLRGSQ LQENAILSIQ
801: TLPRLVWLSF YNAYMGPRLR FAQGFQNLKI LEIVQMKHLT EVVIEDGAMF ELQKLYVRAC RGLEYVPRGI ENLINLQELH LIHVSNQLVE RIRGEGSVDR
901: SRVKHIPAIK HYFRTDNGSF YVSLSS

Arabidopsis Description

RPM1Disease resistance protein RPM1 [Source:UniProtKB/Swiss-Prot;Acc:Q39214]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.