Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- peroxisome 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0028g02380.t01 | Wine grape | nucleus | 43.33 | 31.71 |
| KRH27034 | Soybean | nucleus | 42.38 | 30.9 |
| KRH22295 | Soybean | nucleus | 41.43 | 30.42 |
| PGSC0003DMT400052626 | Potato | nucleus | 40.95 | 30.39 |
| Solyc07g053310.2.1 | Tomato | cytosol | 40.95 | 30.39 |
| Bra014563.1-P | Field mustard | nucleus | 40.95 | 29.15 |
| CDX88994 | Canola | nucleus | 40.95 | 29.15 |
| CDY00574 | Canola | nucleus | 40.95 | 29.15 |
| AT3G58600.1 | Thale cress | nucleus | 40.48 | 28.15 |
| CDY49234 | Canola | nucleus | 30.95 | 26.97 |
| GSMUA_Achr5P03850_001 | Banana | nucleus | 22.86 | 16.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.43 | 15.73 |
| GSMUA_Achr6P21420_001 | Banana | nucleus | 5.24 | 5.47 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P21430_001 | EnsemblPlants:GSMUA_Achr6T21430_001 | EnsemblPlantsGene:GSMUA_Achr6G21430_001 | Gene3D:2.30.29.30 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006897 | GO:GO:0008150 | GO:GO:0016020 | InterPro:IPR011993 | InterPro:NECAP_PHear | InterPro:PH-like_dom_sf |
| PANTHER:PTHR12847 | PANTHER:PTHR12847:SF4 | PFAM:PF07933 | SEG:seg | SUPFAM:SSF50729 | UniParc:UPI000296D5D0 |
| UniProt:M0T8Z1 | MapMan:35.1 | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G21430_001]
Coordinates
chr6:-:17710048..17712032
Molecular Weight (calculated)
23326.9 Da
IEP (calculated)
5.687
GRAVY (calculated)
-0.344
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MTCEMLRVSA FGTIQLATPE LAPINSHGPP LLALYATMSV RKSCRESGEE EELNKSTHSP SKDGKINASR TLTMDRPTHP NLPGSEQGGG GGDDEEAVEL
101: VLFHANECYV YLIPPRKSAA SYRADEWNVN KWAWEGVLKV VSKGKECIIR LEDKTSGELY ARAFLREGEP HPVEPVIDSS RYFVLRVEEN IGKFLTLPLN
201: CVMQILVKPL
101: VLFHANECYV YLIPPRKSAA SYRADEWNVN KWAWEGVLKV VSKGKECIIR LEDKTSGELY ARAFLREGEP HPVEPVIDSS RYFVLRVEEN IGKFLTLPLN
201: CVMQILVKPL
001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG
Arabidopsis Description
Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:UniProtKB/TrEMBL;Acc:Q84WV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.