Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014563.1-P | Field mustard | nucleus | 75.1 | 61.36 |
| CDX88994 | Canola | nucleus | 74.69 | 61.02 |
| CDY00574 | Canola | nucleus | 74.27 | 60.68 |
| AT3G58600.1 | Thale cress | nucleus | 69.71 | 55.63 |
| KRH27034 | Soybean | nucleus | 55.19 | 46.18 |
| Solyc07g053310.2.1 | Tomato | cytosol | 53.94 | 45.94 |
| PGSC0003DMT400052626 | Potato | nucleus | 53.94 | 45.94 |
| KRH22295 | Soybean | nucleus | 52.7 | 44.41 |
| VIT_12s0028g02380.t01 | Wine grape | nucleus | 52.7 | 44.25 |
| Zm00001d044470_P006 | Maize | cytosol, nucleus, peroxisome | 50.62 | 42.21 |
| TraesCS3A01G220500.1 | Wheat | cytosol | 53.53 | 42.02 |
| EES01071 | Sorghum | cytosol | 50.21 | 42.01 |
| TraesCS3D01G232100.1 | Wheat | cytosol | 53.11 | 41.69 |
| Os01t0614700-01 | Rice | nucleus | 51.45 | 40.0 |
| GSMUA_Achr6P21420_001 | Banana | nucleus | 28.63 | 34.33 |
| GSMUA_Achr6P21430_001 | Banana | cytosol, peroxisome, plastid | 26.97 | 30.95 |
| HORVU3Hr1G054050.3 | Barley | plastid | 53.53 | 30.79 |
| TraesCS3B01G250800.1 | Wheat | nucleus | 52.7 | 29.33 |
| CDX86664 | Canola | nucleus | 23.24 | 20.97 |
| CDY15480 | Canola | nucleus | 23.65 | 20.8 |
| CDX89856 | Canola | nucleus | 23.24 | 20.51 |
Protein Annotations
| EnsemblPlants:CDY49234 | EnsemblPlantsGene:GSBRNA2T00092624001 | Gene3D:2.30.29.30 | InterPro:IPR011993 | InterPro:PH-like_dom_sf | ncoils:Coil |
| PANTHER:PTHR12847 | PANTHER:PTHR12847:SF4 | ProteinID:CDY49234 | ProteinID:CDY49234.1 | SEG:seg | SUPFAM:SSF50729 |
| UniParc:UPI0004EDCCE0 | UniProt:A0A078IIP3 | MapMan:35.2 | : | : | : |
Description
BnaA09g55130DBnaA09g55130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIP3]
Coordinates
chrLK032820:-:7636..9651
Molecular Weight (calculated)
27321.0 Da
IEP (calculated)
4.594
GRAVY (calculated)
-0.708
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQPSSSSSI DEEKKLPTIV DDNEEREAIK IALFQMLECD VYLIPTRKST ASYRADEWDV SKWAWEGALK VAFLRDGEPH PVDAVIDSSR YFVLRVEETI
101: AALHDHMKYL NKKKTAEEME QHFHNTSSVD YRLKEGETIV LQLKNVRFII ETEEKSLSNL SLEDKGKSIE TTIPSITPPP PPPGPLSPAT TAQKSPSSLS
201: LQRSSEHQDL DTKREELEKK EEQEAKEIGV EYDFGDLQAA C
101: AALHDHMKYL NKKKTAEEME QHFHNTSSVD YRLKEGETIV LQLKNVRFII ETEEKSLSNL SLEDKGKSIE TTIPSITPPP PPPGPLSPAT TAQKSPSSLS
201: LQRSSEHQDL DTKREELEKK EEQEAKEIGV EYDFGDLQAA C
001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG
Arabidopsis Description
Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:UniProtKB/TrEMBL;Acc:Q84WV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.