Factsheet for Bra014563.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G58600.1	Thale cress	nucleus	84.75	82.78
CDY49234	Canola	nucleus	61.36	75.1
KRH27034	Soybean	nucleus	65.08	66.67
Solyc07g053310.2.1	Tomato	cytosol	63.39	66.08
PGSC0003DMT400052626	Potato	nucleus	63.39	66.08
VIT_12s0028g02380.t01	Wine grape	nucleus	63.73	65.51
KRH22295	Soybean	nucleus	62.37	64.34
EES01071	Sorghum	cytosol	57.97	59.38
Zm00001d044470_P006	Maize	cytosol, nucleus, peroxisome	57.63	58.82
TraesCS3A01G220500.1	Wheat	cytosol	60.34	57.98
TraesCS3D01G232100.1	Wheat	cytosol	60.34	57.98
Os01t0614700-01	Rice	nucleus	58.64	55.81
GSMUA_Achr6P21420_001	Banana	nucleus	34.58	50.75
HORVU3Hr1G054050.3	Barley	plastid	61.02	42.96
TraesCS3B01G250800.1	Wheat	nucleus	60.68	41.34
GSMUA_Achr6P21430_001	Banana	cytosol, peroxisome, plastid	29.15	40.95
Bra015277.1-P	Field mustard	nucleus	26.78	28.94
Bra030548.1-P	Field mustard	nucleus	26.78	28.83

Protein Annotations

EnsemblPlants:Bra014563.1	EnsemblPlants:Bra014563.1-P	EnsemblPlantsGene:Bra014563	Gene3D:2.30.29.30	GO:GO:0005575	GO:GO:0006810
GO:GO:0006897	GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993	InterPro:NECAP_PHear	InterPro:PH-like_dom_sf
ncoils:Coil	PANTHER:PTHR12847	PANTHER:PTHR12847:SF4	PFAM:PF07933	SEG:seg	SUPFAM:SSF50729
UniParc:UPI00025441C5	UniProt:M4DDJ5	MapMan:35.1	:	:	:

Description

AT3G58600 (E=1e-125) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: endocytosis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4); ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT1G03900.1); Has 329 Blast hits to 329 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 43; Plants - 52; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).

Coordinates

chrA04:+:1467766..1469544

Molecular Weight (calculated)

33140.6 Da

IEP (calculated)

4.563

GRAVY (calculated)

-0.787

Length

295 amino acids

Sequence
(BLAST)

001: MDQASSSSNV KEEKRSSTDP VTVDENEERE AIEIPLFQVP ECYVYLIPPR KSAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: DGELHPVEAV IDSSRYFVLR VEENIGGRVR HAFIGLGFRE RTEAYDVQAA LHDHMKYLNK KKTAEEMEQH FQNTSSVDYS LKEGETIVLQ LKNRNEKDTK
201: TKLVEKSLSN LSLEDKGKSI ETIPPIIPPP PPPGPLSPAA TTPKSPSSLS LQRSSEQQDL DTKREEVEKK EDQEAKETGV EDAPDDDFGD FQAAG

Best Arabidopsis Sequence Match ( AT3G58600.1 )
(BLAST)

001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG

Arabidopsis Description

Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:UniProtKB/TrEMBL;Acc:Q84WV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.