Factsheet for Bra015277.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra019999.1-P
Bra030793.1-P
Bra032176.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03900.1	Bra019999.1-P	AT1G09700.1	21798944
AT1G03900.1	Bra030793.1-P	AT1G09700.1	21798944
AT1G03900.1	Bra032176.1-P	AT2G23290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89856	Canola	nucleus	97.8	97.8
Bra030548.1-P	Field mustard	nucleus	91.21	90.88
AT1G03900.1	Thale cress	nucleus	90.11	90.44
PGSC0003DMT400065575	Potato	cytosol	48.72	77.33
VIT_07s0005g03660.t01	Wine grape	cytosol	74.73	73.38
KRH19576	Soybean	cytosol	75.09	72.18
KRH32201	Soybean	cytosol	72.53	70.46
PGSC0003DMT400026697	Potato	cytosol	72.89	70.07
Solyc09g066490.2.1	Tomato	cytosol	72.53	69.96
Solyc06g008340.2.1	Tomato	cytosol	69.96	69.71
PGSC0003DMT400065577	Potato	cytosol	69.96	69.71
Zm00001d014039_P001	Maize	cytosol	70.7	67.96
EER94087	Sorghum	cytosol	70.7	67.96
GSMUA_Achr5P03850_001	Banana	nucleus	69.96	67.49
Os10t0476000-01	Rice	cytosol	70.33	66.9
TraesCS1A01G153300.1	Wheat	cytosol	67.77	66.07
GSMUA_AchrUn_...	Banana	nucleus	68.86	65.73
TraesCS1B01G171600.1	Wheat	cytosol	67.4	65.71
TraesCS1D01G151800.1	Wheat	cytosol	67.4	65.71
Bra014563.1-P	Field mustard	nucleus	28.94	26.78

Protein Annotations

EnsemblPlants:Bra015277.1	EnsemblPlants:Bra015277.1-P	EnsemblPlantsGene:Bra015277	Gene3D:2.30.29.30	GO:GO:0005575	GO:GO:0006810
GO:GO:0006897	GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993	InterPro:NECAP_PHear	InterPro:PH-like_dom_sf
PANTHER:PTHR12847	PANTHER:PTHR12847:SF3	PFAM:PF07933	SEG:seg	SUPFAM:SSF50729	UniParc:UPI000254427E
UniProt:M4DFK4	MapMan:35.1	:	:	:	:

Description

AT1G03900 (E=1e-108) ATNAP4 | ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4); ATPase, coupled to transmembrane movement of substances / transporter

Coordinates

chrA10:-:2753694..2755236

Molecular Weight (calculated)

29937.9 Da

IEP (calculated)

6.682

GRAVY (calculated)

-0.721

Length

273 amino acids

Sequence
(BLAST)

001: MSFEGEEEEE TFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDKIWSG RLRVVSCKDR CEIRLEDSSS GDLFAACFVD PARRENSVEP SLDSSRYFVL
101: RIDDGRGKYA FIGLGFAERN EAFDFNVALS DHEKYVRREK EKETGETSES DDHIDIHPAV NHRLKEGETI RINVKPKPTT SGTGMLSAAL SGNGKPKPLA
201: LAPPPSASTK TRSPLPPPPN DPIASRIASG GSKEPTDNTR RRNDPLSDLS QLKKNLPSTK GSGSTGAAGW AAF

Best Arabidopsis Sequence Match ( AT1G03900.1 )
(BLAST)

001: MSFEEEEEEE TFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDKIWSG RLRVVSCKDR CEIRLEDSNS GDLFAACFVD PGRRENSVEP SLDSSRYFVL
101: RIDDGRGKYA FIGLGFAERN EAFDFNVALS DHEKYVRREK EKETGETSES DNHIDIHPAV NHRLKEGETI RINVKPKPTT NGTGMLSAAL SGTGKPKPLA
201: LAPPPKAAGV TRSPLPPPPN DPVASRIASD GCKESRRNEP LSDLSQLKKN LPSTAGSGSS KSTGAASGWA AF

Arabidopsis Description

ATNAP4NAP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WMR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.