Factsheet for Solyc06g008340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g092930.1.1
Solyc04g076420.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03900.1	Solyc04g076420.2.1	AT1G09700.1	21798944
AT1G03900.1	Solyc02g092930.1.1	AT2G23290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065577	Potato	cytosol	95.62	95.62
PGSC0003DMT400065575	Potato	cytosol	59.12	94.19
Solyc09g066490.2.1	Tomato	cytosol	81.39	78.8
CDX86664	Canola	nucleus	69.71	71.54
AT1G03900.1	Thale cress	nucleus	70.8	71.32
VIT_07s0005g03660.t01	Wine grape	cytosol	71.53	70.5
Bra030548.1-P	Field mustard	nucleus	70.44	70.44
CDY15480	Canola	nucleus	70.44	70.44
Bra015277.1-P	Field mustard	nucleus	69.71	69.96
CDX89856	Canola	nucleus	69.34	69.6
KRH19576	Soybean	cytosol	71.53	69.01
GSMUA_Achr5P03850_001	Banana	nucleus	70.8	68.55
KRH32201	Soybean	cytosol	70.07	68.33
TraesCS1A01G153300.1	Wheat	cytosol	69.71	68.21
TraesCS1D01G151800.1	Wheat	cytosol	69.34	67.86
TraesCS1B01G171600.1	Wheat	cytosol	68.98	67.5
EER94087	Sorghum	cytosol	68.98	66.55
Zm00001d014039_P001	Maize	cytosol	68.98	66.55
Os10t0476000-01	Rice	cytosol	68.98	65.85
GSMUA_AchrUn_...	Banana	nucleus	68.25	65.38
Solyc07g053310.2.1	Tomato	cytosol	27.74	26.86

Protein Annotations

EnsemblPlants:Solyc06g008340.2.1	EnsemblPlantsGene:Solyc06g008340.2	Gene3D:2.30.29.30	GO:GO:0005575	GO:GO:0006810	GO:GO:0006897
GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993	InterPro:NECAP_PHear	InterPro:PH-like_dom_sf	PANTHER:PTHR12847
PANTHER:PTHR12847:SF3	PFAM:PF07933	SEG:seg	SUPFAM:SSF50729	UniParc:UPI000276671A	UniProt:K4C3L4
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:2216005..2219508

Molecular Weight (calculated)

29708.7 Da

IEP (calculated)

5.983

GRAVY (calculated)

-0.527

Length

274 amino acids

Sequence
(BLAST)

001: MSFDEDEESF EHTLLVVREV NVFKIPPRPT SGGYKCGEWL QTDKIWSGRL RVVSCKDRCE IRLEDPNSGE LFAACFVPPG QRENSVESVL DSSRYFVLKI
101: EDGTGKHAFI GLGFSERNEA FDFNVALSDH EKYVKRDIEK DGDEAETSSD GHIDIHPAVN HRLKEGETIR INVKNKSSSG MGMLSAAVQS KAITIAPPPS
201: GANKIRSPLP PPPNDPAISR KTSTTASIAL KGPNGSSMQS SDPISDLSQL ERSLPSATGS GSSKKTTAAG WAAF

Best Arabidopsis Sequence Match ( AT1G03900.1 )
(BLAST)

001: MSFEEEEEEE TFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDKIWSG RLRVVSCKDR CEIRLEDSNS GDLFAACFVD PGRRENSVEP SLDSSRYFVL
101: RIDDGRGKYA FIGLGFAERN EAFDFNVALS DHEKYVRREK EKETGETSES DNHIDIHPAV NHRLKEGETI RINVKPKPTT NGTGMLSAAL SGTGKPKPLA
201: LAPPPKAAGV TRSPLPPPPN DPVASRIASD GCKESRRNEP LSDLSQLKKN LPSTAGSGSS KSTGAASGWA AF

Arabidopsis Description

ATNAP4NAP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WMR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.