Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G151800.1 | Wheat | cytosol | 98.93 | 98.93 |
| TraesCS1A01G153300.1 | Wheat | cytosol | 98.57 | 98.57 |
| Os10t0476000-01 | Rice | cytosol | 86.07 | 83.97 |
| Zm00001d014039_P001 | Maize | cytosol | 85.0 | 83.8 |
| EER94087 | Sorghum | cytosol | 85.0 | 83.8 |
| PGSC0003DMT400065575 | Potato | cytosol | 47.14 | 76.74 |
| GSMUA_Achr5P03850_001 | Banana | nucleus | 72.5 | 71.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 73.21 | 71.68 |
| VIT_07s0005g03660.t01 | Wine grape | cytosol | 71.07 | 71.58 |
| PGSC0003DMT400026697 | Potato | cytosol | 71.07 | 70.07 |
| CDX86664 | Canola | nucleus | 66.79 | 70.04 |
| Solyc09g066490.2.1 | Tomato | cytosol | 70.71 | 69.96 |
| PGSC0003DMT400065577 | Potato | cytosol | 67.86 | 69.34 |
| Bra030548.1-P | Field mustard | nucleus | 67.5 | 68.98 |
| Solyc06g008340.2.1 | Tomato | cytosol | 67.5 | 68.98 |
| CDY15480 | Canola | nucleus | 67.14 | 68.61 |
| AT1G03900.1 | Thale cress | nucleus | 66.43 | 68.38 |
| KRH19576 | Soybean | cytosol | 68.93 | 67.96 |
| Bra015277.1-P | Field mustard | nucleus | 65.71 | 67.4 |
| CDX89856 | Canola | nucleus | 65.71 | 67.4 |
| KRH32201 | Soybean | cytosol | 67.14 | 66.9 |
| TraesCS3B01G250800.1 | Wheat | nucleus | 30.0 | 19.4 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G171600.1 | EnsemblPlantsGene:TraesCS1B01G171600 | Gene3D:2.30.29.30 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006897 |
| GO:GO:0008150 | GO:GO:0016020 | InterPro:IPR011993 | InterPro:NECAP_PHear | InterPro:PH-like_dom_sf | PANTHER:PTHR12847 |
| PANTHER:PTHR12847:SF3 | PFAM:PF07933 | SEG:seg | SUPFAM:SSF50729 | TIGR:cd13228 | MapMan:35.1 |
Description
No Description!
Coordinates
chr1B:-:305174394..305178202
Molecular Weight (calculated)
30223.5 Da
IEP (calculated)
6.167
GRAVY (calculated)
-0.546
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLPEEEEA FEHTLLVVRE VSVFKIPPRT TSGGYKCGEW LQTDKIWTGR LRVVSCGDRC EIRLEDPGSG DLFAACFVLP GQRDSAVETV LDSSRYFVLR
101: IEDGRGKHAF VGLGFGERNE AFDFNVALSD HEKYVKREQD KETGGEEADD SQIDIHPAVN RRLKEGETIR INVKNKPSTR SGMLSSAGLS GGATEKPKAS
201: MLLAPPPGAT GKLRSPLPPP PNDSASARMS SGPNAGTRAS KEPTKKSIDP FSDISAIERS LPSSTELGQT KSTGAGWAAF
101: IEDGRGKHAF VGLGFGERNE AFDFNVALSD HEKYVKREQD KETGGEEADD SQIDIHPAVN RRLKEGETIR INVKNKPSTR SGMLSSAGLS GGATEKPKAS
201: MLLAPPPGAT GKLRSPLPPP PNDSASARMS SGPNAGTRAS KEPTKKSIDP FSDISAIERS LPSSTELGQT KSTGAGWAAF
001: MSFEEEEEEE TFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDKIWSG RLRVVSCKDR CEIRLEDSNS GDLFAACFVD PGRRENSVEP SLDSSRYFVL
101: RIDDGRGKYA FIGLGFAERN EAFDFNVALS DHEKYVRREK EKETGETSES DNHIDIHPAV NHRLKEGETI RINVKPKPTT NGTGMLSAAL SGTGKPKPLA
201: LAPPPKAAGV TRSPLPPPPN DPVASRIASD GCKESRRNEP LSDLSQLKKN LPSTAGSGSS KSTGAASGWA AF
101: RIDDGRGKYA FIGLGFAERN EAFDFNVALS DHEKYVRREK EKETGETSES DNHIDIHPAV NHRLKEGETI RINVKPKPTT NGTGMLSAAL SGTGKPKPLA
201: LAPPPKAAGV TRSPLPPPPN DPVASRIASD GCKESRRNEP LSDLSQLKKN LPSTAGSGSS KSTGAASGWA AF
Arabidopsis Description
ATNAP4NAP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WMR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.