Factsheet for VIT_07s0005g03660.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0129g01050.t01
VIT_18s0001g07670.t01
VIT_18s0001g09850.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03900.1	VIT_18s0001g07670.t01	AT1G09700.1	21798944
AT1G03900.1	VIT_07s0129g01050.t01	AT2G23290.1	21798944
AT1G03900.1	VIT_18s0001g09850.t01	AT2G23290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065575	Potato	cytosol	49.28	79.65
KRH19576	Soybean	cytosol	77.7	76.06
AT1G03900.1	Thale cress	nucleus	73.74	75.37
CDX86664	Canola	nucleus	72.3	75.28
KRH32201	Soybean	cytosol	75.54	74.73
Bra015277.1-P	Field mustard	nucleus	73.38	74.73
Bra030548.1-P	Field mustard	nucleus	73.38	74.45
CDY15480	Canola	nucleus	73.02	74.09
CDX89856	Canola	nucleus	72.66	73.99
PGSC0003DMT400026697	Potato	cytosol	75.18	73.59
GSMUA_Achr5P03850_001	Banana	nucleus	74.82	73.5
Solyc09g066490.2.1	Tomato	cytosol	74.46	73.14
PGSC0003DMT400065577	Potato	cytosol	71.58	72.63
TraesCS1A01G153300.1	Wheat	cytosol	72.3	71.79
GSMUA_AchrUn_...	Banana	nucleus	73.74	71.68
Solyc06g008340.2.1	Tomato	cytosol	70.5	71.53
TraesCS1D01G151800.1	Wheat	cytosol	71.94	71.43
Zm00001d014039_P001	Maize	cytosol	72.66	71.13
EER94087	Sorghum	cytosol	72.66	71.13
TraesCS1B01G171600.1	Wheat	cytosol	71.58	71.07
Os10t0476000-01	Rice	cytosol	72.66	70.38
VIT_12s0028g02380.t01	Wine grape	nucleus	29.5	28.57

Protein Annotations

EntrezGene:100254924	wikigene:100254924	Gene3D:2.30.29.30	MapMan:35.1	UniProt:A5BDX1	EMBL:AM455906
ProteinID:CAN67814	ProteinID:CAN67814.1	ProteinID:CBI37136	ProteinID:CBI37136.3	EMBL:FN596502	GO:GO:0005575
GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993	EntrezGene:LOC100254924
wikigene:LOC100254924	InterPro:NECAP_PHear	PFAM:PF07933	InterPro:PH-like_dom_sf	PANTHER:PTHR12847	PANTHER:PTHR12847:SF3
SUPFAM:SSF50729	UniParc:UPI0001520905	ArrayExpress:VIT_07s0005g03660	EnsemblPlantsGene:VIT_07s0005g03660	EnsemblPlants:VIT_07s0005g03660.t01	unigene:Vvi.3487
RefSeq:XP_002276998	RefSeq:XP_002276998.1	RefSeq:XP_003632429	RefSeq:XP_003632429.1	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:6553811..6561074

Molecular Weight (calculated)

29903.9 Da

IEP (calculated)

5.659

GRAVY (calculated)

-0.487

Length

278 amino acids

Sequence
(BLAST)

001: MSFDEDEAFE HTLLVVREVS VYKIPPRSTS GGYKCGEWLQ SDLIWTGRLR VVSCKDRCEI RLEDPNSGEL FAACFVLPGQ RESSVETVLD SSRYFVLKIE
101: DGAGKHAFIG LGFAERNEAF DFNVALSDHE KYVRREQEKE TGEASDDGSH IDIHPAVNHR LKDGETIRIN VKNKATSGTG MLSAAGLSGT QSGTGKPKTL
201: GLAPPPTGAG KIRSPLPPPP NDPAAARMTS SGVDLKGSEE DMRHTTDAFS GLSQLEKSLP ASTSSGSTKT TASGWAAF

Best Arabidopsis Sequence Match ( AT1G03900.1 )
(BLAST)

001: MSFEEEEEEE TFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDKIWSG RLRVVSCKDR CEIRLEDSNS GDLFAACFVD PGRRENSVEP SLDSSRYFVL
101: RIDDGRGKYA FIGLGFAERN EAFDFNVALS DHEKYVRREK EKETGETSES DNHIDIHPAV NHRLKEGETI RINVKPKPTT NGTGMLSAAL SGTGKPKPLA
201: LAPPPKAAGV TRSPLPPPPN DPVASRIASD GCKESRRNEP LSDLSQLKKN LPSTAGSGSS KSTGAASGWA AF

Arabidopsis Description

ATNAP4NAP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WMR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.