Factsheet for GSMUA_Achr5P03850_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr8P16450_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03900.1	GSMUA_Achr11P...	AT1G09700.1	21798944
AT1G03900.1	GSMUA_Achr8P16450_001	AT1G09700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	79.86	79.02
PGSC0003DMT400065575	Potato	cytosol	46.29	76.16
VIT_07s0005g03660.t01	Wine grape	cytosol	73.5	74.82
Zm00001d014039_P001	Maize	cytosol	73.5	73.24
EER94087	Sorghum	cytosol	73.5	73.24
TraesCS1D01G151800.1	Wheat	cytosol	72.44	73.21
Os10t0476000-01	Rice	cytosol	74.2	73.17
PGSC0003DMT400026697	Potato	cytosol	73.14	72.89
TraesCS1A01G153300.1	Wheat	cytosol	72.08	72.86
TraesCS1B01G171600.1	Wheat	cytosol	71.73	72.5
Solyc09g066490.2.1	Tomato	cytosol	72.44	72.44
CDX86664	Canola	nucleus	67.84	71.91
KRH19576	Soybean	cytosol	72.08	71.83
KRH32201	Soybean	cytosol	70.67	71.17
Solyc06g008340.2.1	Tomato	cytosol	68.55	70.8
Bra030548.1-P	Field mustard	nucleus	67.84	70.07
CDX89856	Canola	nucleus	67.49	69.96
Bra015277.1-P	Field mustard	nucleus	67.49	69.96
PGSC0003DMT400065577	Potato	cytosol	67.49	69.71
AT1G03900.1	Thale cress	nucleus	66.78	69.49
CDY15480	Canola	nucleus	67.14	69.34
GSMUA_Achr6P21420_001	Banana	nucleus	17.67	24.88
GSMUA_Achr6P21430_001	Banana	cytosol, peroxisome, plastid	16.96	22.86

Protein Annotations

EnsemblPlants:GSMUA_Achr5P03850_001	EnsemblPlants:GSMUA_Achr5T03850_001	EnsemblPlantsGene:GSMUA_Achr5G03850_001	Gene3D:2.30.29.30	GO:GO:0005575	GO:GO:0006810
GO:GO:0006897	GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993	InterPro:NECAP_PHear	InterPro:PH-like_dom_sf
PANTHER:PTHR12847	PANTHER:PTHR12847:SF3	PFAM:PF07933	SEG:seg	SUPFAM:SSF50729	UniParc:UPI0002954D46
UniProt:M0SVG4	MapMan:35.1	:	:	:	:

Description

Uncharacterized protein At1g03900 [Source:GMGC_GENE;Acc:GSMUA_Achr5G03850_001]

Coordinates

chr5:-:2701492..2712755

Molecular Weight (calculated)

30586.8 Da

IEP (calculated)

7.012

GRAVY (calculated)

-0.549

Length

283 amino acids

Sequence
(BLAST)

001: MAASSSSVVE EEEAFEHTLL VVREVSVYKI PPRSSSGGYK CGEWLQSDKI WSGRLRVVSC GDRCEIRLED PGSGELFAAC FVRLGQRENS VETVLDSSRY
101: FVLKIEDGQG KHAFIGLGFN ERNEAFDFNV ALSDHEKYLR REHEKETSVD TDESHIEIHP AVNHRLKEGE TIRINVKNKP ASGGGMLSAA GLSAGASSKH
201: KATTFLAPPP GGARKLRSPL PPPPNDPATA RMTLGHNSGL NPPKDSARRP GDSLQDLSSI ERSLPSTTGS GSTKSTASGW AAF

Best Arabidopsis Sequence Match ( AT1G03900.1 )
(BLAST)

001: MSFEEEEEEE TFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDKIWSG RLRVVSCKDR CEIRLEDSNS GDLFAACFVD PGRRENSVEP SLDSSRYFVL
101: RIDDGRGKYA FIGLGFAERN EAFDFNVALS DHEKYVRREK EKETGETSES DNHIDIHPAV NHRLKEGETI RINVKPKPTT NGTGMLSAAL SGTGKPKPLA
201: LAPPPKAAGV TRSPLPPPPN DPVASRIASD GCKESRRNEP LSDLSQLKKN LPSTAGSGSS KSTGAASGWA AF

Arabidopsis Description

ATNAP4NAP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WMR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.