Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0028g02380.t01 | Wine grape | nucleus | 53.23 | 37.28 |
| EES01071 | Sorghum | cytosol | 52.24 | 36.46 |
| KRH27034 | Soybean | nucleus | 52.24 | 36.46 |
| Solyc07g053310.2.1 | Tomato | cytosol | 50.75 | 36.04 |
| Zm00001d044470_P006 | Maize | cytosol, nucleus, peroxisome | 51.24 | 35.64 |
| CDY00574 | Canola | nucleus | 52.24 | 35.59 |
| KRH22295 | Soybean | nucleus | 50.25 | 35.31 |
| AT3G58600.1 | Thale cress | nucleus | 52.74 | 35.1 |
| PGSC0003DMT400052626 | Potato | nucleus | 49.25 | 34.98 |
| CDX88994 | Canola | nucleus | 51.24 | 34.92 |
| Bra014563.1-P | Field mustard | nucleus | 50.75 | 34.58 |
| TraesCS3A01G220500.1 | Wheat | cytosol | 52.74 | 34.53 |
| TraesCS3D01G232100.1 | Wheat | cytosol | 52.24 | 34.2 |
| Os01t0614700-01 | Rice | nucleus | 49.75 | 32.26 |
| CDY49234 | Canola | nucleus | 34.33 | 28.63 |
| HORVU3Hr1G054050.3 | Barley | plastid | 53.73 | 25.78 |
| TraesCS3B01G250800.1 | Wheat | nucleus | 53.23 | 24.71 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.87 | 18.18 |
| GSMUA_Achr5P03850_001 | Banana | nucleus | 24.88 | 17.67 |
| GSMUA_Achr6P21430_001 | Banana | cytosol, peroxisome, plastid | 5.47 | 5.24 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P21420_001 | EnsemblPlants:GSMUA_Achr6T21420_001 | EnsemblPlantsGene:GSMUA_Achr6G21420_001 | Gene3D:2.30.29.30 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006897 | GO:GO:0008150 | GO:GO:0016020 | InterPro:IPR011993 | InterPro:NECAP_PHear | InterPro:PH-like_dom_sf |
| PANTHER:PTHR12847 | PANTHER:PTHR12847:SF4 | PFAM:PF07933 | SEG:seg | SUPFAM:SSF50729 | UniParc:UPI000294E720 |
| UniProt:M0T8Z0 | MapMan:35.2 | : | : | : | : |
Description
adaptin ear-binding coat-associated protein 2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G21420_001]
Coordinates
chr6:-:17705195..17709948
Molecular Weight (calculated)
22291.3 Da
IEP (calculated)
6.398
GRAVY (calculated)
-0.631
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MPISTNGLIS QVSKHMIVLT RLFFNHVILE NEACGRKRHA FIGIGFRERT EAYDFQAALH DHMKYLDKKK VAEEMEQHYQ TTSTVDYSLK EGETLVLQLK
101: NKGGQKVKSA CLEQSLNNLS LDGKTKTQEG SICLKPPPPP PAPLSPVKPA ERSSFTSEPS TTEDTELHSK VELSPKETSK NIESSAQNAI DDDFGDFQAA
201: G
101: NKGGQKVKSA CLEQSLNNLS LDGKTKTQEG SICLKPPPPP PAPLSPVKPA ERSSFTSEPS TTEDTELHSK VELSPKETSK NIESSAQNAI DDDFGDFQAA
201: G
001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG
Arabidopsis Description
Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:UniProtKB/TrEMBL;Acc:Q84WV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.