CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27034	Soybean	nucleus	93.01	92.36
Solyc07g053310.2.1	Tomato	cytosol	68.88	69.61
VIT_12s0028g02380.t01	Wine grape	nucleus	68.53	68.29
PGSC0003DMT400052626	Potato	nucleus	67.48	68.2
EES01071	Sorghum	cytosol	64.34	63.89
AT3G58600.1	Thale cress	nucleus	67.13	63.58
CDX88994	Canola	nucleus	64.69	62.71
Bra014563.1-P	Field mustard	nucleus	64.34	62.37
CDY00574	Canola	nucleus	64.34	62.37
Zm00001d044470_P006	Maize	cytosol, nucleus, peroxisome	62.24	61.59
TraesCS3D01G232100.1	Wheat	cytosol	64.34	59.93
TraesCS3A01G220500.1	Wheat	cytosol	63.64	59.28
Os01t0614700-01	Rice	nucleus	62.94	58.06
CDY49234	Canola	nucleus	44.41	52.7
GSMUA_Achr6P21420_001	Banana	nucleus	35.31	50.25
HORVU3Hr1G054050.3	Barley	plastid	63.29	43.2
TraesCS3B01G250800.1	Wheat	nucleus	63.99	42.26
GSMUA_Achr6P21430_001	Banana	cytosol, peroxisome, plastid	30.42	41.43
KRH19576	Soybean	cytosol	29.37	29.58
KRH32201	Soybean	cytosol	29.02	29.54

Protein Annotations

EMBL:ACUP02008404	EMBL:BT099459	EnsemblPlants:KRH22295	EnsemblPlantsGene:GLYMA_13G291500	EntrezGene:100813301	Gene3D:2.30.29.30
GO:GO:0005575	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993
InterPro:NECAP_PHear	InterPro:PH-like_dom_sf	PANTHER:PTHR12847	PANTHER:PTHR12847:SF4	PFAM:PF07933	ProteinID:KRH22295
ProteinID:KRH22295.1	SUPFAM:SSF50729	UniParc:UPI0001B1712F	UniProt:C6TNX5	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr13:+:39166219..39170021

Molecular Weight (calculated)

32186.6 Da

IEP (calculated)

4.608

GRAVY (calculated)

-0.755

Length

286 amino acids

Sequence
(BLAST)

001: MENEENEPHI QKSGGESEDA EPIELVLFQV PECYVYIIPP RMTAASYRAD EWDVNKWAWE GILKVTSKGE ECIIKLEDKS TGELYARAFL RNGEPHPVEP
101: VIDSSRYFVL RIEENIGGRL RHAFIGIGFR ERTEAYDFQA ALHDHMKYLN KKKTAEEMEQ HYQQTSSVDY SLKEGETLVL QIKTNKSGSS VKSKFFELGL
201: NKSPEEKNGG KESIPSIKLS PPPAPLSPVF GTQKSPTNSP TNLSLEKTNI VETPKTVKDT EPEDSPEKQS TEDVLDDDFG DFQAAG

Best Arabidopsis Sequence Match ( AT3G58600.1 )
(BLAST)

001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG

Arabidopsis Description

Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:UniProtKB/TrEMBL;Acc:Q84WV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.