Factsheet for Zm00001d044470_P006

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01071	Sorghum	cytosol	92.39	92.71
Os01t0614700-01	Rice	nucleus	81.31	75.81
TraesCS3D01G232100.1	Wheat	cytosol	79.93	75.24
TraesCS3A01G220500.1	Wheat	cytosol	79.58	74.92
VIT_12s0028g02380.t01	Wine grape	nucleus	64.36	64.81
Solyc07g053310.2.1	Tomato	cytosol	63.32	64.66
PGSC0003DMT400052626	Potato	nucleus	61.94	63.25
KRH27034	Soybean	nucleus	62.63	62.85
KRH22295	Soybean	nucleus	61.59	62.24
AT3G58600.1	Thale cress	nucleus	60.9	58.28
CDY00574	Canola	nucleus	59.17	57.97
Bra014563.1-P	Field mustard	nucleus	58.82	57.63
CDX88994	Canola	nucleus	58.82	57.63
TraesCS3B01G250800.1	Wheat	nucleus	79.24	52.89
GSMUA_Achr6P21420_001	Banana	nucleus	35.64	51.24
HORVU3Hr1G054050.3	Barley	plastid	74.05	51.07
CDY49234	Canola	nucleus	42.21	50.62
Zm00001d014039_P001	Maize	cytosol	33.22	33.8

Protein Annotations

EntrezGene:100272882	Gene3D:2.30.29.30	MapMan:35.1	UniProt:B4FRD1	EMBL:BT039669	EMBL:BT040755
ncoils:Coil	EMBL:EU954557	GO:GO:0005575	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150
GO:GO:0016020	InterPro:IPR011993	InterPro:NECAP_PHear	ProteinID:ONM41259.1	PFAM:PF07933	InterPro:PH-like_dom_sf
PANTHER:PTHR12847	PANTHER:PTHR12847:SF4	SUPFAM:SSF50729	UniParc:UPI00017B77F8	EnsemblPlantsGene:Zm00001d044470	EnsemblPlants:Zm00001d044470_P006
EnsemblPlants:Zm00001d044470_T006	SEG:seg	:	:	:	:

Description

Adaptin ear-binding coat-associated protein 1 NECAP-1

Coordinates

chr3:+:229092063..229098715

Molecular Weight (calculated)

32079.7 Da

IEP (calculated)

4.888

GRAVY (calculated)

-0.677

Length

289 amino acids

Sequence
(BLAST)

001: MATGGGNEQP PAEAEPLELV LFQVAECYVY LIPPRKTSAS YRADEWNVNK WAWEGALKVV SKGEECIIKL EDKKTGELYA RAFLREGEPH PVEPVIDSSR
101: YFVLRVEENI DGRQRHAFIG LGFRERPEAY DFQAALHDHM KYLNKKKAAE EMIQHYEKQS SVDYSLKEGE TLVLQLKNKE TGTKTKSTFF EQGLNKLSVN
201: EKTSAKEAPV SLKLPPPPPS PVSPTDSGVA ASPFKAEFPS QEQPPAEPVS RTSALPSKGE PAPELPAAAE KMKEQESVDE DFGDFQAAG

Best Arabidopsis Sequence Match ( AT3G58600.1 )
(BLAST)

001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG

Arabidopsis Description

Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:UniProtKB/TrEMBL;Acc:Q84WV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.