CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044470_P006	Maize	cytosol, nucleus, peroxisome	92.71	92.39
Os01t0614700-01	Rice	nucleus	82.29	76.45
TraesCS3D01G232100.1	Wheat	cytosol	80.9	75.9
TraesCS3A01G220500.1	Wheat	cytosol	80.56	75.57
Solyc07g053310.2.1	Tomato	cytosol	64.93	66.08
VIT_12s0028g02380.t01	Wine grape	nucleus	65.62	65.85
KRH22295	Soybean	nucleus	63.89	64.34
PGSC0003DMT400052626	Potato	nucleus	63.19	64.31
KRH27034	Soybean	nucleus	64.24	64.24
AT3G58600.1	Thale cress	nucleus	61.46	58.61
CDY00574	Canola	nucleus	59.72	58.31
CDX88994	Canola	nucleus	59.38	57.97
Bra014563.1-P	Field mustard	nucleus	59.38	57.97
TraesCS3B01G250800.1	Wheat	nucleus	79.86	53.12
GSMUA_Achr6P21420_001	Banana	nucleus	36.46	52.24
HORVU3Hr1G054050.3	Barley	plastid	75.35	51.79
CDY49234	Canola	nucleus	42.01	50.21
EER94087	Sorghum	cytosol	32.29	32.75

Protein Annotations

Gene3D:2.30.29.30	MapMan:35.1	EntrezGene:8054378	UniProt:C5XR09	ncoils:Coil	EnsemblPlants:EES01071
ProteinID:EES01071	ProteinID:EES01071.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150
GO:GO:0016020	InterPro:IPR011993	InterPro:NECAP_PHear	PFAM:PF07933	InterPro:PH-like_dom_sf	PANTHER:PTHR12847
PANTHER:PTHR12847:SF4	EnsemblPlantsGene:SORBI_3003G219500	SUPFAM:SSF50729	unigene:Sbi.18442	UniParc:UPI0001A84A82	RefSeq:XP_002455951.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:55479759..55483345

Molecular Weight (calculated)

31956.5 Da

IEP (calculated)

4.740

GRAVY (calculated)

-0.634

Length

288 amino acids

Sequence
(BLAST)

001: MATGGGNEQA PAEAEPLELV LFQVAECYVY LIPPRMTAAS YRADEWNVNK WAWEGALKVV SKGEECIIKL EDKNTGELYA RAFLREGEPH PVEPVIDSSR
101: YFVLRVEENI DGRQRHAFIG LGFRERPEAY DFQAALHDHM KYLNKKKAAE EMVQHYEKQS SVDYSLKEGE TLVLQIKNKE TGTKTKSAFF EQGLNKLSLN
201: EKTNTKEVPV SLKLPPPPPS PVSPTDPGVA ASPFKAEFPP QEQPAAEPIS RTSALPSKGE PTPELPAAAE KSEHETVDDD FGDFQAAG

Best Arabidopsis Sequence Match ( AT3G58600.1 )
(BLAST)

001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG

Arabidopsis Description

Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:UniProtKB/TrEMBL;Acc:Q84WV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.